LOCUS BC070343 1456 bp mRNA linear HUM 11-MAY-2004
DEFINITION Homo sapiens T cell receptor alpha locus, mRNA (cDNA clone
MGC:88348 IMAGE:30350378), complete cds.
ACCESSION BC070343
VERSION BC070343.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1456)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1456)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (10-MAY-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Dr. Michael Brownstein and Dr. Miklos Palkovits
cDNA Library Preparation: CLONTECH Laboratories, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 57 Row: o Column: 5
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis, Similarity but not identity to protein.
FEATURES Location/Qualifiers
source 1..1456
/db_xref="H-InvDB:HIT000264298"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:88348 IMAGE:30350378"
/tissue_type="Glandular pool- thyroid, parathyroid,
adrenal cortex, pineal gland, submandibular gland."
/clone_lib="NIH_MGC_184"
/lab_host="DH10B"
/note="Vector: pDNR-LIB"
gene 1..1456
/gene="TRA@"
/gene_synonym="TCRA"
/gene_synonym="TRA"
/db_xref="GeneID:6955"
/db_xref="MIM:186880"
CDS 60..881
/gene="TRA@"
/gene_synonym="TCRA"
/gene_synonym="TRA"
/codon_start=1
/product="TRA@ protein"
/protein_id="AAH70343.1"
/db_xref="GeneID:6955"
/db_xref="MIM:186880"
/translation="MKSLRVLLVILWLQLSWVWSQQKEVEQDPGPLSVPEGAIVSLNC
TYSNSAFQYFMWYRQYSRKGPELLMYTYSSGNKEDGRFTAQVDKSSKYISLFIRDSQP
SDSATYLCAMSARTGNQFYFGTGTSLTVIPNIQNPDPAVYQLRDSKSSDKSVCLFTDF
DSQTNVSQSKDSDVYITDKTVLDMRSMDFKSNSAVAWSNKSDFACANAFNNSIIPEDT
FFPSPESSCDVKLVEKSFETDTNLNFQNLSVIGFRILLLKVAGFNLLMTLRLWSS"
BASE COUNT 382 a 364 c 326 g 384 t
ORIGIN
1 attatttttt tttcgtgttt aaggtttgaa tcctcagtga accagggcag aaaagaatga
61 tgaaatcctt gagagtttta ctggtgatcc tgtggcttca gttaagctgg gtttggagcc
121 aacagaagga ggtggagcag gatcctggac cactcagtgt tccagaggga gccattgttt
181 ctctcaactg cacttacagc aacagtgctt ttcaatactt catgtggtac agacagtatt
241 ccagaaaagg ccctgagttg ctgatgtaca catactccag tggtaacaaa gaagatggaa
301 ggtttacagc acaggtcgat aaatccagca agtatatctc cttgttcatc agagactcac
361 agcccagtga ttcagccacc tacctctgtg caatgagcgc gcggaccggt aaccagttct
421 attttgggac agggacaagt ttgacggtca ttccaaatat ccagaaccct gaccctgccg
481 tgtaccagct gagagactct aaatccagtg acaagtctgt ctgcctattc accgattttg
541 attctcaaac aaatgtgtca caaagtaagg attctgatgt gtatatcaca gacaaaactg
601 tgctagacat gaggtctatg gacttcaaga gcaacagtgc tgtggcctgg agcaacaaat
661 ctgactttgc atgtgcaaac gccttcaaca acagcattat tccagaagac accttcttcc
721 ccagcccaga aagttcctgt gatgtcaagc tggtcgagaa aagctttgaa acagatacga
781 acctaaactt tcaaaacctg tcagtgattg ggttccgaat cctcctcctg aaagtggccg
841 ggtttaatct gctcatgacg ctgcggctgt ggtccagctg agatctgcaa gattgtaaga
901 cagcctgtgc tccctcgctc cttcctctgc attgcccctc ttctccctct ccaaacagag
961 ggaactctcc tacccccaag gaggtgaaag ctgctaccac ctctgtgccc ccccggcaat
1021 gccaccaact ggatcctacc cgaatttatg attaagattg ctgaagagct gccaaacact
1081 gctgccaccc cctctgttcc cttattgctg cttgtcactg cctgacattc acggcagagg
1141 caaggctgct gcagcctccc ctggctgtgc acattccctc ctgctcccca gagactgcct
1201 ccgccatccc acagatgatg gatcttcagt gggttctctt gggctctagg tcccggagaa
1261 tgttgtgagg ggtttatttt tttttaatag tgttcataaa gaaagacata gtattcttct
1321 tctcaagacg tggggggaaa ttatctcatt atcgaggccc tgctatgctg tgtgtctggg
1381 cgtgttgtat gtcctgctgc cgatgccttc attaaaatga tttggaagag caaaaaaaaa
1441 aaaaaaaaaa aaaaaa
//