LOCUS BC070107 4108 bp mRNA linear HUM 19-MAR-2007
DEFINITION Homo sapiens solute carrier family 12 (potassium/chloride
transporters), member 6, mRNA (cDNA clone MGC:87622 IMAGE:4826538),
complete cds.
ACCESSION BC070107
VERSION BC070107.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4108)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4108)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (10-MAY-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 167 Row: g Column: 13.
FEATURES Location/Qualifiers
source 1..4108
/db_xref="H-InvDB:HIT000264065"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:87622 IMAGE:4826538"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..4108
/gene="SLC12A6"
/gene_synonym="DKFZP434D2135"
/gene_synonym="KCC3A"
/gene_synonym="KCC3B"
/db_xref="GeneID:9990"
/db_xref="HGNC:HGNC:10914"
/db_xref="MIM:604878"
CDS 198..3473
/gene="SLC12A6"
/gene_synonym="DKFZP434D2135"
/gene_synonym="KCC3A"
/gene_synonym="KCC3B"
/codon_start=1
/product="solute carrier family 12 (potassium/chloride
transporters), member 6"
/protein_id="AAH70107.2"
/db_xref="GeneID:9990"
/db_xref="HGNC:HGNC:10914"
/db_xref="MIM:604878"
/translation="MSEMSGATTSLATVALDPPSDRTSHPQDVIEDLSQNSITGEHSQ
LLDDGHKKARNAYLNNSNYEEGDEYFDKNLALFEEEMDTRPKVSSLLNRMANYTNLTQ
GAKEHEEAENITEGKKKPTKTPQMGTFMGVYPPCLQNIFGVILFLRLTWVVGTAGVLQ
AFAIVLICCCCTMLTAISMSAIATNGVVPAGGSYFMISRALGPEFGGAVGLCFYLGTT
FAAAMYILGAIEIFLVYIVPRAAIFHSDDALKESAAMLNNMRVYGTAFLVLMVLVVFI
GVRYVNKFASLFLACVIVSILAIYAGAIKSSFAPPHFPVCMLGNRTLSSRHIDVCSKT
KEINNMTVPSKLWGFFCNSSQFFNATCDEYFVHNNVTSIQGIPGLASGIITENLWSNY
LPKGEIIEKPSAKSSDVLGSLNHEYVLVDITTSFTLLVGIFFPSVTGIMAGSNRSGDL
KDAQKSIPIGTILAILTTSFVYLSNVVLFGACIEGVVLRDKFGDAVKGNLVVGTLSWP
SPWVIVIGSFFSTCGAGLQSLTGAPRLLQAIAKDNIIPFLRVFGHSKANGEPTWALLL
TAAIAELGILIASLDLVAPILSMFFLMCYLFVNLACALQTLLRTPNWRPRFRYYHWAL
SFMGMSICLALMFISSWYYAIVAMVIAGMIYKYIEYQGAEKEWGDGIRGLSLSAARFA
LLRLEEGPPHTKNWRPQLLVLLKLDEDLHVKHPRLLTFASQLKAGKGLTIVGSVIVGN
FLENYGEALAAEQTIKHLMEAEKVKGFCQLVVAAKLREGISHLIQSCGLGGMKHNTVV
MGWPNGWRQSEDARAWKTFIGTVRVTTAAHLALLVAKNISFFPSNVEQFSEGNIDVWW
IVHDGGMLMLLPFLLKQHKVWRKCSIRIFTVAQLEDNSIQMKKDLATFLYHLRIEAEV
EVVEMHDSDISAYTYERTLMMEQRSQMLRHMRLSKTERDREAQLVKDRNSMLRLTSIG
SDEDEETETYQEKVHMTWTKDKYMASRGQKAKSMEGFQDLLNMRPDQSNVRRMHTAVK
LNEVIVNKSHEAKLVLLNMPGPPRNPEGDENYMEFLEVLTEGLERVLLVRGGGSEVIT
IYS"
BASE COUNT 1097 a 976 c 954 g 1081 t
ORIGIN
1 gcactcggtc accgcgggct gcggcggctg ggcggggctt tcgggcgccc gcgggacggt
61 tccgccctct cactgcaccc ccgggcttct cttcgcaagg tttgtcagac accagtccgg
121 acctcagctc tcgatctagt tcccgagtaa gatttagctc ccgggaaagc gtgcctgaaa
181 caagccggag tgagcctatg agtgagatgt ctggggccac cacttcgctg gcaactgttg
241 cactggatcc acccagtgac cggacttctc acccccagga tgtcatcgag gacctgagtc
301 agaactccat cacaggggaa cacagccaac tgttagacga cggacataag aaagctcgaa
361 atgcttatct caataattcc aattatgaag aaggagatga atattttgat aaaaatttgg
421 cactctttga ggaagaaatg gacaccagac cgaaggtgtc ttccctcctc aaccgcatgg
481 ccaattacac taatctgact caaggagcaa aggaacatga agaggcagaa aacatcactg
541 aagggaaaaa gaagcccacc aagacccccc aaatgggtac cttcatgggt gtctaccccc
601 catgtctaca aaatattttt ggagtgatcc tttttttacg ccttacatgg gtggtgggca
661 cagctggagt tcttcaggct tttgcaattg tccttatctg ctgctgctgt acaatgttga
721 ctgctatctc catgagtgcc attgccacta atggagtggt gccagctggg ggctcatact
781 ttatgatttc ccgggcactg ggcccagagt ttggtggggc tgttggcctc tgcttttatc
841 ttggtaccac atttgcagca gccatgtaca tccttggtgc cattgaaatc tttctggtct
901 atatcgtccc ccgagctgcc atctttcaca gtgatgacgc actcaaggaa tcagcagcca
961 tgctaaataa catgcgtgtc tacggcacag ctttcttggt ccttatggta ttagtggtat
1021 ttatcggcgt acgctatgtg aacaagtttg cctcactttt cctggcctgt gtcattgtgt
1081 ccatcttggc catctatgct ggagccatca agtcttcttt tgctcctcca cacttcccgg
1141 tctgcatgct gggtaaccgc accctttcat caagacacat tgacgtttgc tctaagacca
1201 aggaaattaa caacatgaca gtcccatcaa agttatgggg attcttctgt aactcgagtc
1261 aatttttcaa tgccacctgt gatgaatact ttgttcacaa taacgtcact tcaatccagg
1321 gcattcctgg attggctagt ggtataatta cagagaatct ttggagtaat tacctaccca
1381 agggagagat catcgaaaag ccttcagcca aatcttctga tgtcttaggc agcttaaacc
1441 atgaatatgt tcttgttgac atcaccacct ccttcacgct tctggtggga atcttctttc
1501 cctctgttac aggtatcatg gctggatcaa acagatctgg agatctgaaa gatgctcaga
1561 agtctattcc gattggtact atccttgcca tcctgaccac ctcctttgtt tatttaagca
1621 atgttgtcct ttttggtgca tgtattgaag gggttgttct cagagacaag ttcggtgatg
1681 ctgtgaaagg taatttggtg gtaggcacct tatcttggcc atccccatgg gtgattgtta
1741 ttggctcctt cttttcaaca tgtggggctg gacttcagag cctcacaggt gcaccgaggc
1801 tgctacaagc tattgccaag gataacatca taccgtttct gagggttttt ggccacagca
1861 aagccaatgg ggaacctacc tgggctttac ttctaactgc tgccattgca gagcttggaa
1921 tactcattgc ctccctggat cttgtggccc caattctttc catgtttttt ctcatgtgtt
1981 acctctttgt aaacttggca tgtgccttgc aaacattact tcgaacaccc aactggagac
2041 cccgattccg ctactaccat tgggcccttt ctttcatggg aatgagtatc tgtctggctc
2101 tgatgttcat ttcttcctgg tattatgcca ttgtagccat ggtaatagct ggtatgatct
2161 acaagtacat tgaataccaa ggagctgaga aagaatgggg tgatggtatc cgtgggctgt
2221 ccctcagtgc agcccggttt gctttgcttc gattggagga aggacctcca cacactaaaa
2281 actggaggcc tcagttgctt gtattactga aactagatga agacttacat gtcaagcatc
2341 ctcgcctcct cacctttgcc tcacagctca aagcaggaaa aggtctcact attgtgggct
2401 ctgtcatcgt ggggaacttc ctagagaact acggtgaagc tttagctgct gagcagacca
2461 taaagcacct aatggaggca gagaaggtaa aaggattctg ccagctggtg gtggccgcca
2521 agctgagaga gggcatttcc cacctcatcc agtcatgtgg ccttgggggc atgaagcaca
2581 acacggtggt gatgggctgg cctaatggct ggcgtcaaag cgaagatgcc cgcgcttgga
2641 agacttttat tggcacagtt cgagtgacaa ctgctgccca tcttgcactg ctggtggcta
2701 aaaacatctc cttctttccc agcaatgtgg agcaattttc tgagggcaac attgatgtgt
2761 ggtggattgt gcatgatggg gggatgctta tgctactacc attcctactg aaacagcaca
2821 aggtgtggcg aaagtgcagc atacggatct tcacagtagc ccaattagaa gacaacagta
2881 tccaaatgaa gaaggaccta gccaccttcc tatatcactt acgcattgag gcggaggtag
2941 aagtggtgga gatgcatgac agtgatatat cagcatatac ttacgagcgc actttgatga
3001 tggaacaaag gtcccagatg cttcggcaca tgcggctatc caaaacagag cgagacagag
3061 aggcacaatt ggtgaaagac cgaaactcaa tgctacgatt gaccagcatt ggctctgatg
3121 aggacgaaga gacagaaacc tatcaggaga aggtgcacat gacttggaca aaagacaagt
3181 acatggcatc ccggggacaa aaagcgaagt caatggaagg attccaggac ctgcttaaca
3241 tgcgtccgga ccagtccaat gtgaggcgga tgcatacagc agtgaaactc aacgaggtta
3301 tagttaacaa gtcccatgaa gcaaagctgg ttttattgaa tatgccaggg ccaccccgaa
3361 accctgaggg tgatgaaaac tacatggagt tcctagaggt gcttaccgag ggactagagc
3421 gagtcctact tgtccggggt ggtggcagtg aagtgatcac catttattca taacctactc
3481 tgaatgaccg tgcttgacct gttttcttaa aaggcctacg tcctccatgg aagtgccagc
3541 tcattactac cactcccact caactagaag cctgtgttct gtacacatca tactgaactc
3601 ttgatgagct gagcctcaag tacctgtgta aaagagctcc catctgatct gcagtcatta
3661 cagaaaaagc aaatattccc tcaacatcag aacaatgctc aagtctttca agccacgtct
3721 gagcagtcaa aggcaaatta gaattaacaa gctgagccaa taaatgaatt ggtaaaaggg
3781 atgctagaaa ttcaactgaa gaaaaaaagc aagtcaagta cgtattcagc attaaagatg
3841 aatctcagaa gtcatggttc aatgttgaca ctgtgaggat aacaactaga gacagcttca
3901 tcttactaaa gaatttatgg tcaagtatat ttggacctat tatcctcggc aagccaagat
3961 gcaaacattt tttagctata tttctttagt atacccactg ctgtaatttt atattaggat
4021 actaacttga aacatggctg cagcctctac ttcttcaaaa acatcccccc aaaataccag
4081 atttaaatat ccaaaaaaaa aaaaaaaa
//