LOCUS BC070087 2081 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens serpin peptidase inhibitor, clade H (heat shock
protein 47), member 1, (collagen binding protein 1), mRNA (cDNA
clone MGC:87465 IMAGE:5274406), complete cds.
ACCESSION BC070087
VERSION BC070087.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2081)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2081)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (10-MAY-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 167 Row: o Column: 19
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 32454740.
FEATURES Location/Qualifiers
source 1..2081
/db_xref="H-InvDB:HIT000264045"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:87465 IMAGE:5274406"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2081
/gene="SERPINH1"
/gene_synonym="AsTP3"
/gene_synonym="gp46"
/gene_synonym="HSP47"
/gene_synonym="PIG14"
/gene_synonym="RA-A47"
/db_xref="GeneID:871"
/db_xref="HGNC:HGNC:1546"
/db_xref="MIM:600943"
CDS 102..1358
/gene="SERPINH1"
/gene_synonym="AsTP3"
/gene_synonym="gp46"
/gene_synonym="HSP47"
/gene_synonym="PIG14"
/gene_synonym="RA-A47"
/codon_start=1
/product="serpin peptidase inhibitor, clade H (heat shock
protein 47), member 1, (collagen binding protein 1)"
/protein_id="AAH70087.1"
/db_xref="GeneID:871"
/db_xref="HGNC:HGNC:1546"
/db_xref="MIM:600943"
/translation="MRSLLLLSAFCLLEAALAAEVKKPAAAAAPGTAEKLSPKAATLA
ERSAGLAFSLYQAMAKDQAVENILVSPVVVASSLGLVSLGGKATTASQAKAVLSAEQL
RDEEVHAGLGELLRSLSNSTARNVTWKLGSRLYGPSSVSFADDFVRSSKQHYNCEHSK
INFRDKRSALQSINEWAAQTTDGKLPEVTKDVERTDGALLVNAMFFKPHWDEKFHHKM
VDNRGFMVTRSYTVGVMMMHRTGLYNYYDDEKEKLQIVEMPLAHKLSSLIIFMPHHVE
PLERLEKLLTKEQLKIWMGKMQKKAVAISLPKGVVEVTHDLQKHLAGLGLTEAIDKNK
ADLSRMSGKKDLYLASVFHATAFELDTDGNPFDQDIYGREELRSPKLFYADHPFIFLV
RDTQSGSLLFIGRLVRPKGDKMRDEL"
BASE COUNT 474 a 613 c 600 g 394 t
ORIGIN
1 aagagtagaa tcgtgtcgcg gctcgagagc gagagtcacg tcccggcgct agcccagccc
61 gacccaggcc caccgtggtg cacgcaaacc acttcctggc catgcgctcc ctcctgcttc
121 tcagcgcctt ctgcctcctg gaggcggccc tggccgccga ggtgaagaaa cctgcagccg
181 cagcagctcc tggcactgcg gagaagttga gccccaaggc ggccacgctt gccgagcgca
241 gcgccggcct ggccttcagc ttgtaccagg ccatggccaa ggaccaggca gtggagaaca
301 tcctggtgtc acccgtggtg gtggcctcgt cgctggggct cgtgtcgctg ggcggcaagg
361 cgaccacggc gtcgcaggcc aaggcagtgc tgagcgccga gcagctgcgc gacgaggagg
421 tgcacgccgg cctgggcgag ctgctgcgct cactcagcaa ctccacggcg cgcaacgtga
481 cctggaagct gggcagccga ctgtacggac ccagctcagt gagcttcgct gatgacttcg
541 tgcgcagcag caagcagcac tacaactgcg agcactccaa gatcaacttc cgcgacaagc
601 gcagcgcgct gcagtccatc aacgagtggg ccgcgcagac caccgacggc aagctgcccg
661 aggtcaccaa ggacgtggag cgcacggacg gcgccctgtt agtcaacgcc atgttcttca
721 agccacactg ggatgagaaa ttccaccaca agatggtgga caaccgtggc ttcatggtga
781 ctcggtccta taccgtgggt gtcatgatga tgcaccggac aggcctctac aactactacg
841 acgacgagaa ggaaaagctg caaatcgtgg agatgcccct ggcccacaag ctctccagcc
901 tcatcatctt catgccccat cacgtggagc ctctcgagcg ccttgaaaag ctgctaacca
961 aagagcagct gaagatctgg atggggaaga tgcagaagaa ggctgttgcc atctccttgc
1021 ccaagggtgt ggtggaggtg acccatgacc tgcagaaaca cctggctggg ctgggcctga
1081 ctgaggccat tgacaagaac aaggccgact tgtcacgcat gtcaggcaag aaggacctgt
1141 acctggccag cgtgttccac gccaccgcct ttgagttgga cacagatggc aacccctttg
1201 accaggacat ctacgggcgc gaggagctgc gcagccccaa gctgttctac gccgaccacc
1261 ccttcatctt cctagtgcgg gacacccaaa gcggctccct gctattcatt gggcgcctgg
1321 tccggcctaa gggtgacaag atgcgagacg agttataggg cctcagggtg cacacaggat
1381 ggcaggaggc atccaaaggc tcctgagaca catgggtgct attggggttg ggggggaggt
1441 gaggtaccag ccttggatac tccatggggt gggggtggaa aagcagacca gggttcccgt
1501 gtgcctgagc ggaccttccc agctagaatt cactccactt ggacatgggc cccagatacc
1561 atgatgctga gcccggaaac tccacatcct gtgggacctg ggccatagtc attctgcctg
1621 ccctgaaagt cccagatcaa gcctgcctca atcagtattc atatttatag ccaggtacct
1681 tctcacctgt gagaccaaat tgagctaggg gggtcagcca gccctcttct gacactaaaa
1741 cacctcagct gcctccccag ctctatccca acctctccca actataaaac taggtgctgc
1801 agcccctggg accaggcacc cccagaatga cctggccgca gtgaggcgga ttgagaagga
1861 gctcccagga ggggcttctg ggcagactct ggtcaagaag catcgtgtct ggcgttgtgg
1921 ggatgaactt tttgttttgt ttcttccttt tttagttctt caaagatagg gagggaaggg
1981 ggaacatgag cctttgttgc tatcaatcca agaacttatt tgtacatttt ttttttcaat
2041 aaaacttttc caatgacaaa aaaaagaaaa aaaaaaaaaa a
//