LOCUS BC070071 4727 bp mRNA linear HUM 21-JUL-2005
DEFINITION Homo sapiens RNA binding motif protein 16, mRNA (cDNA clone
MGC:87340 IMAGE:4374384), complete cds.
ACCESSION BC070071
VERSION BC070071.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4727)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4727)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (10-MAY-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 167 Row: a Column: 7
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 47604915.
FEATURES Location/Qualifiers
source 1..4727
/db_xref="H-InvDB:HIT000264029"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:87340 IMAGE:4374384"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..4727
/gene="RBM16"
/gene_synonym="KIAA1116"
/db_xref="GeneID:22828"
CDS 233..4048
/gene="RBM16"
/gene_synonym="KIAA1116"
/codon_start=1
/product="RBM16 protein"
/protein_id="AAH70071.1"
/db_xref="GeneID:22828"
/translation="MEAVKTFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVV
QSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRC
PGDDKSKIVRVLNLWQKNNVFKSEIIQPLLDMAAGIPPPVVTPVLASTTTAMSNTPGT
PVTPVTPANVVQGLPDPWVSQITNTDTLAAVAQILQSPQGQQLQQLIQTLQIQQQKPQ
PSILQALDAGLVVQLQALTAQLTAAAAAANTLTPLEQGVSFNKKLMDRFDFGEDSEHS
EEPKKEIPASQLSHVSESVNISIFHQIAEQLQQQNLEHLRQQLLEQQQPQKATPQDSQ
EGTFGSEHSASPSQGSSQQHFLEPEVNLDDSIDIQQQDMDIDEGQDGVEEEVFEQEAK
KVAVRSRSRTHSRSRSRSPRKRRSRSRSGSRKRKHRKRSRSRSRERKRKSSRSYSSER
RAREREKERQKKGLPPIRSKTLSVCSTTLWVGQVDKKATQQDLTNLFEEFGQIESINM
IPPRGCAYVCMVHRQDAFRALQKLSSGSYKIGSKVIKIAWALNKGVKTEYKQFWDVDL
GVTYIPWEKVKVDDLEGFAEGGMIDQETVNTEWETVKSSEPVKETVQTTQSPTPVEKE
TVVTTQAEVFPPPVAMLQIPVAPAVPTVSLVPPAFPVSMPVPPPGFSPIPPPPFLRAS
FNPSQPPPGFMPPPVPPPVVPPPTIPPVVPTSLVQPSLSMTPETVKDVGFGSLVIPGG
SVASNLATSALPAGNVFNAPTKQAEPEEKVPHLIDHQISSGENTRSVIPNDISSNAAI
LGGQPPNVTSNSGILGVQRPNVSSNSEILGVRPSNVSSSSGIIAAQPPNILNNSGILG
IQPPSVSNSSGLLGVLPPNIPNNSGLVGVQPPNVPNTPGLLGTQPPAGPQNLPPLSIP
NQRMPTMPMLDIRPGLIPQAPGPRFPLIQPGIPPQRGIPPPSVLDSALHPPPRGPFPP
GDIFSQPERPFLAPGRQSVDNVTNPEKRIPLGNDNIQQEGDRDYRFPPIETRESISRP
PPVDVRDVVGRPIDPREGPGRPPLDGRDHFGRPPVDIRENLVRPGIDHLGRRDHFGFN
PEKPWGHRGDFDEREHRVLPVYGGPKGLHEERGRFRSGNYRFDPRSGPWNRGFGQEVH
RDFDDRRRPWERQRDRDDRDFDFCREMNGNRLGRDRIQNTWVPPPHARVFDYFEGATS
QRKGDNVPQVNGENTERHAQPPPIPVQNDPELYEKLTSSNEINKEKSDTVADIESEPV
VESTETEGT"
BASE COUNT 1429 a 1039 c 1045 g 1214 t
ORIGIN
1 gcggatcccc gaactgcgcg gcccgactcg agtccgccat attggatgcc gcagccgctg
61 ctgccagcgc ttcctcctct gtcttcgccg agcggggctg gttcctgcgg cccgagcggc
121 ggggagcgcc ccctcctcgc ggccacgcag cagcccgcgt ctcgctctcc ccacccagtg
181 cagtggccgc cgcctcttcc gccgccgggc tcggggcctc cgcagcgaca acatggaggc
241 cgtgaagacc ttcaatagcg agttgtattc cctgaatgac tataaaccac ccatttcgaa
301 agcgaaaatg acccaaatta ctaaggcagc catcaaagct attaagttct ataaacatgt
361 ggtacagagt gttgagaagt ttattcagaa atgtaaacca gaatacaaag tacctggact
421 ttatgttatt gactccattg tgcgacaatc ccgacatcag tttggtcaag aaaaggatgt
481 gtttgcaccc agatttagta ataacatcat tagcactttc cagaatttat atcgttgccc
541 tggggatgac aagagtaaaa tagtgagagt actaaactta tggcagaaga ataatgtatt
601 taagagtgag attattcagc cccttttgga tatggcagcc gggattccgc ctccagttgt
661 cacacctgtt ttggccagca ctaccactgc tatgagcaat actccaggaa ctcctgtgac
721 acctgttact ccggccaatg tggtccaagg cttacctgat ccgtgggtat ctcagataac
781 aaatacagat acacttgcgg ctgtagctca gatcttgcaa agtcctcaag gccagcagct
841 tcaacaatta atacaaacct tacagataca acaacagaag ccccagcctt ccattctgca
901 ggccctagat gctggtcttg ttgttcagtt gcaagctctt acggcacaac ttacagctgc
961 agctgcagct gccaacactc ttactccctt agaacaggga gtctccttta acaagaagtt
1021 gatggatagg tttgattttg gggaagactc tgagcatagt gaagaaccca aaaaggaaat
1081 tccagcttca caactttctc acgtttcaga atctgtgaac atttccattt ttcatcagat
1141 agcagaacaa ctacaacagc aaaacctaga acatctcaga cagcagctct tggagcagca
1201 acagcctcaa aaggccactc ctcaggatag tcaggaagga acctttgggt cagagcattc
1261 agcgtcacca tcacaaggga gtagtcagca gcattttctt gaacctgaag tcaatttgga
1321 tgattccata gatattcagc aacaggatat ggatatagat gaagggcaag atggagtgga
1381 agaggaggtc tttgaacaag aagctaagaa agtggcggtt cgctcaagat caagaacaca
1441 ttcacgatct cgttcaagat caccaagaaa acgaaggtct aggtcacggt ctggctctag
1501 aaagcgtaaa cacagaaagc gatcacgctc ccgctcaaga gaaagaaaga ggaaatcatc
1561 acggtcgtat tcaagtgaaa ggagagccag agaaagggag aaagaacgac agaaaaaggg
1621 attacctcca attagatcta aaacactaag tgtatgtagt actactctct gggttgggca
1681 agtggacaag aaggcaacac agcaagactt aaccaacctg tttgaagagt ttggacagat
1741 tgaatccatt aatatgattc ctccccgggg ctgtgcttat gtctgcatgg ttcatcgaca
1801 agatgcattt cgagctcttc agaaactcag ttctggatca tataaaattg ggtccaaggt
1861 cattaagatc gcttgggctt taaacaaagg tgtaaaaaca gaatacaaac aattctggga
1921 tgtggatctt ggagttacat atataccatg ggaaaaagtt aaagtggatg acttggaagg
1981 ttttgcagaa ggaggcatga ttgatcagga gactgtaaat actgagtggg aaactgtgaa
2041 aagctcagaa cctgttaaag agacggtcca gacaactcag agcccaactc cagttgaaaa
2101 ggagacagtg gtcacaaccc aggcagaggt tttccctcct cctgttgcta tgttgcagat
2161 tccagtggcg ccagccgtgc ctacagttag tttagtccca ccagcatttc ctgtgtcgat
2221 gccggttcct cctcctggat tcagtccaat ccctccacct ccttttttaa gagcaagttt
2281 taacccttca caaccaccac ctggtttcat gccgcctcca gttcccccac ctgttgtgcc
2341 accccctacg attccaccag tagtaccaac atctttagtg cagccgtcat tatccatgac
2401 accggaaact gtgaaagatg ttggatttgg tagccttgtt ataccaggcg gttctgttgc
2461 cagcaatctt gctacttccg ctctgccagc tggaaatgtt tttaatgctc caactaaaca
2521 ggcagagcct gaagaaaaag tacctcatct tatagaccac cagatttctt ctggtgaaaa
2581 caccagatca gtgattccaa atgatatttc aagtaatgct gcaattttag gaggacagcc
2641 gccaaatgtg acaagcaatt ctggaattct gggagtccaa agaccaaatg tatcaagtaa
2701 ttctgaaatt cttggggtcc ggccatctaa tgtttccagt agttctggga ttattgcagc
2761 ccaaccacca aatattctaa ataactctgg aatattggga atacagccac ccagtgtgtc
2821 aaatagttct ggacttttgg gagtgctacc cccaaatata cctaacaatt ctggacttgt
2881 aggagtacag ccaccaaatg ttccaaatac tcctggactt ctgggaacac agccaccagc
2941 tggacctcaa aacttacccc ctttaagtat ccctaatcaa aggatgccca caatgccaat
3001 gttagacatt cgtccgggac taataccaca ggcacctggg ccaagattcc ctttaataca
3061 gcctggaatt ccaccccaac ggggaatccc acccccatcg gtacttgatt cagctcttca
3121 tccaccaccc cgtggacctt ttcctccagg agatattttt agtcaaccag aaagaccttt
3181 tttagctcct ggaagacaaa gcgtagacaa tgttactaac ccagaaaaaa ggataccact
3241 tgggaatgat aacattcaac aggaaggaga tagagattat cggtttcctc ctatagaaac
3301 cagggaaagc attagtagac ctccccctgt ggatgttaga gatgtggttg ggcggcctat
3361 agatccaaga gaaggtcctg gacggcctcc actagatggt agggatcatt ttggaagacc
3421 tcctgtagat ataagagaga atcttgtgag gccaggtata gatcatcttg gtcgaagaga
3481 ccactttggc tttaatccag agaagccctg ggggcataga ggagattttg atgagagaga
3541 gcatcgggtt ctaccggtct atggtggtcc aaaaggctta catgaagaaa gaggtagatt
3601 tcggtctgga aactatcgat ttgatcctag aagtggtcct tggaaccgag gatttggaca
3661 agaagttcac agagattttg atgaccgcag aagaccctgg gagaggcaaa gggataggga
3721 tgacagagat tttgatttct gcagagaaat gaatggaaat cgtcttggac gagacagaat
3781 tcaaaacact tgggttcccc ctcctcatgc tcgggttttt gattattttg aaggggccac
3841 ttctcaacga aaaggtgata atgtgcctca ggttaatggt gaaaatacag agagacatgc
3901 tcagccacca cctataccag tacagaatga tcctgaactt tatgaaaaac tgacatcttc
3961 aaatgaaata aacaaggaga agagtgacac agttgctgat atagaaagtg aaccagtggt
4021 agaaagcaca gaaactgagg ggacataatc atcactcagt aggtaaaaga taccttttgt
4081 aaagttgtca tctctctgta atagataatg gctgactgga ccatagttgt tcacttttgt
4141 ctgccagaat taagttaatc tgatgttcat gttcaccttt ctcttaaaat aattgtacaa
4201 ctgacttgta tagacattgt tcttaatatg aacatggtag gtaaactttt tttttatttt
4261 tttctgataa aatacaaatg ttggccccag attcttttaa cgtcaaggaa atgaataaca
4321 gcttgtcaga gacttcctat ggaagaaaga attttttaga tactatcatt aggttggata
4381 tggtaataga tatatttcag aatagcaagt ggtggtatat cttatccata tctttaggct
4441 gctgcagaat tttaaggtta tagataaagc tgtgatattt tatgcaaaga ctggctctag
4501 gtatttgagg agcacaatac agagatttta aaaagtgatt ttgtaaaatc tacactatgg
4561 tctctgtttc tccaaagtaa gtgtttgtga tttgttcctc atactgcagt gagtaaaaaa
4621 gaaacaagaa aacaacaaca taaatattaa agtacgtttc aatgttgggt gaattttgtt
4681 tttagatgcc aataaaactt atttgtttga caaaaaaaaa aaaaaaa
//