LOCUS BC070060 3381 bp mRNA linear HUM 17-JUL-2006 DEFINITION Homo sapiens sphingosine-1-phosphate phosphatase 1, mRNA (cDNA clone MGC:87248 IMAGE:30347615), complete cds. ACCESSION BC070060 VERSION BC070060.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3381) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3381) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (10-MAY-2004) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Dr. Stefan Hansson cDNA Library Preparation: Michael Brownstein / Ted Usdin Laboratory cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 168 Row: o Column: 22 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 40254975. FEATURES Location/Qualifiers source 1..3381 /db_xref="H-InvDB:HIT000264018" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:87248 IMAGE:30347615" /tissue_type="Placenta, normal" /clone_lib="NIH_MGC_147" /lab_host="DH10B" /note="Vector: pBluescriptR" gene 1..3381 /gene="SGPP1" /gene_synonym="SPPase1" /db_xref="GeneID:81537" /db_xref="HGNC:HGNC:17720" CDS 112..1437 /gene="SGPP1" /gene_synonym="SPPase1" /codon_start=1 /product="sphingosine-1-phosphate phosphatase 1" /protein_id="AAH70060.1" /db_xref="GeneID:81537" /db_xref="HGNC:HGNC:17720" /translation="MSLRQRLAQLVGRLQDPQKVARFQRLCGVEAPPRRSADRREDEK AEAPLAGDPRLRGRQPGAPGGPQPPGSDRNQCPAKPDGGGAPNGVRNGLAAELGPASP RRAGALRRNSLTGEEGQLARVSNWPLYCLFCFGTELGNELFYILFFPFWIWNLDPLVG RRLVVIWVLVMYLGQCTKDIIRWPRPASPPVVKLEVFYNSEYSMPSTHAMSGTAIPIS MVLLTYGRWQYPLIYGLILIPCWCSLVCLSRIYMGMHSILDIIAGFLYTILILAVFYP FVDLIDNFNQTHKYAPFIIIGLHLALGIFSFTLDTWSTSRGDTAEILGSGAGIACGSH VTYNMGLVLDPSLDTLPLAGPPITVTLFGKAILRILIGMVFVLIIRDVMKKITIPLAC KIFNIPCDDIRKARQHMEVELPYRYITYGMVGFSITFFVPYIFFFIGIS" BASE COUNT 949 a 641 c 708 g 1083 t ORIGIN 1 agactccgga gggtagagcg ctgtgccggt tccgctgccg ctggccagga gcgcggggac 61 agttcggggc tgcgccggag gccggcccgc cttcccgggg gttccgttat catgtcgctg 121 aggcagcgcc tggcccagct ggttggccgt ctgcaggacc cgcagaaagt ggcccgtttc 181 cagcggctgt gcggggtgga agcgccgccg cgccgctcag cagaccggag ggaggatgag 241 aaagcggagg cgcctctcgc cggagaccct cgactgcgag ggcggcagcc aggggcgcct 301 ggaggccccc agcctcccgg gagcgaccgc aatcagtgcc cggccaagcc ggacggcggc 361 ggcgccccca acggcgtgcg gaacgggctg gcggccgagc tgggcccggc ctcgccgcgg 421 cgcgcgggcg ctctgcgccg caactcgctg acgggcgagg agggccagct ggcccgcgtg 481 agcaactggc cgctctactg cctgttctgc ttcggcacgg agctgggcaa cgaactcttc 541 tacatcctgt tcttcccctt ctggatctgg aacctggacc ctctggtggg ccggaggctc 601 gtggtcatct gggtgctggt catgtacctg ggccagtgca ccaaggacat catccgctgg 661 ccgaggcccg cctcgccgcc cgtggtcaag ttggaggtct tctacaactc tgagtacagc 721 atgccctcca cccatgccat gtccggcacc gccatcccca tttctatggt cctcctcacc 781 tatggccgct ggcagtaccc tcttatatat ggactgattc ttattccctg ctggtgttct 841 ctagtttgcc taagtagaat ttacatggga atgcactcta ttctggatat tattgctgga 901 ttcctatata ccattttaat cttagctgtc ttctatccat ttgtggacct gattgacaac 961 ttcaaccaaa ctcacaaata tgctccattc atcatcatcg ggcttcattt agctttgggg 1021 atcttttctt tcactcttga cacctggagc acatcccgag gagacacagc cgagatacta 1081 ggaagtggtg ctggaattgc atgtggatct catgttactt ataacatggg tctagtatta 1141 gatccttctc tagatacatt acctttagct gggcccccca ttactgtgac tctgtttgga 1201 aaagccatat tgcggatcct catagggatg gtatttgtac taataatcag agatgtaatg 1261 aaaaagatca ccattccttt agcctgcaaa atcttcaata taccgtgtga tgatattcga 1321 aaagcaagac agcacatgga agttgaactt ccttatcggt atattaccta tggaatggtt 1381 ggtttctcca tcacattttt tgttccttac atatttttct ttattggtat ctcttgatgg 1441 agaagtattg tttatgataa gaaaggaggg tatcagttac tgatacccaa aaatatattc 1501 caggtaaagc caggtcagaa ttaggctttt gcaggaattt aacttaaata attatttaag 1561 taaattcata agagtcagtg cattttatca ttgcacatcc agatactgtt ttaggtgagc 1621 tgagctattt cgttactgag aaaatgataa gtatccattt agaatgttca tgtaatgttt 1681 ggagagtttt gtattatgga ttcaacttat atataatata tataaggtac ataatatgca 1741 attgtgtatc tgatatatat tatatataaa ataatatacc taagtgtttt tttaaactat 1801 ggggtgtatt ataaaatcaa taataatatg caaacagttg tgcctgtgta tttgaactac 1861 atacaggtat gttgttatta acagatatat ttaacattta tttactatgg gagccatttc 1921 ctaattgaat tgcgtaatta ctagaccaga atgcatatgc tactatacat tgatttactg 1981 cctgttttta cactgccatt acctttcatg ttatccatga tgttgaacat gggaggcatt 2041 tttaatggac caaattttta gaaaaattag tttttggatt tttttttaag ttctgtatac 2101 tgttttgaat gaactttatt tgcagctatt ctggatgtca gtttaataat tcaggtactg 2161 aattttattg cttgctaatt gtgcctttcc gttgctaaat taagaaatgc tatgtgtact 2221 gtgatgtaaa aataagacat taactttatc ttaagttaca tataatcaag caaatatttt 2281 aaaaaatgta tgtcagggtg acaggcataa aagtaaatta cccttaactc tttagccttt 2341 atttagaaag aaatgtggaa tgggctaaac tttctcacca atttattaga aagctaaatg 2401 gataaatact tccctttttg tagatatttt tctgtgcatt gtaagttata ggagcaggac 2461 atattttttg tacattgtct tgattgttta tactgcaggt aggtatttcc agtgaatgga 2521 aacgttgaaa tttatagatg ggacaatgca catacttcat atgtaaacaa agcatttttc 2581 taaataattt ggaaaggatt ggatttagca ccgttaactt ttaataccca tttattggct 2641 atttaaggta aattataaaa cctaaaatta gtatcagtat tttagatcct attatttttt 2701 caactttcta ttattttcac agtggaaaat ttgcgtatag tattaaacta ttcttttttc 2761 tgtctacctt tatattttga agtgtggttg tacttacgtt aatagtaagt gtatttgtag 2821 aaagtttttc ataaagaaga gattaacttt ccatataaat aaataccagg tatgaaatta 2881 ctgattttag tgcaatatct gtatgattat ccagaactat cacttcagat gtttctattt 2941 tgggcaccat aactatttga gctcatattt ttataattct gattgagaat ttaggggcat 3001 ggtaattttt accaaaactg aagctggtaa ttttaagtaa agcaactaaa tttacccttt 3061 acttattagt taaaaggaaa ccaaggcatg taggaaaata ttggtacgtt ggaaaatgtg 3121 aaaagagctt tactttcaaa atgtatgttt aatgaattga attttaggga ccgtttccca 3181 taatttgggc ctatgctatc ctgttgattt ttatgtctag cttaaaaggt atttgaaaat 3241 gttccatttg tgttttatta ttttctgtcc tatgacagtt ctatgctaaa tgtattttaa 3301 aataaaagcc aaattgaaga ttaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 3361 aaaaaagaaa aaaaaaaaaa a //