LOCUS BC069249 2581 bp mRNA linear HUM 18-MAR-2009
DEFINITION Homo sapiens serrate RNA effector molecule homolog (Arabidopsis),
mRNA (cDNA clone IMAGE:5427083), partial cds.
ACCESSION BC069249
VERSION BC069249.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2581)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2581)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (26-APR-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 54 Row: f Column: 9.
FEATURES Location/Qualifiers
source 1..2581
/db_xref="H-InvDB:HIT000263403"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5427083"
/tissue_type="Brain, astrocytoma, grade IV"
/clone_lib="NIH_MGC_98"
/lab_host="DH10B"
/note="Vector: pOTB7"
gene <1..2581
/gene="SRRT"
/gene_synonym="ARS2"
/gene_synonym="ASR2"
/gene_synonym="serrate"
/db_xref="GeneID:51593"
/db_xref="HGNC:HGNC:24101"
CDS <1..2440
/gene="SRRT"
/gene_synonym="ARS2"
/gene_synonym="ASR2"
/gene_synonym="serrate"
/codon_start=2
/product="SRRT protein"
/protein_id="AAH69249.1"
/db_xref="GeneID:51593"
/db_xref="HGNC:HGNC:24101"
/translation="RFSPPRHELSPPQKRMRRDWDEHSSDPYHSGYEMPYAGGGGGPT
YGPPQPWGHPDVHIMQHHVLPIQARLGSIAEIDLGVPPPVMKTFKEFLLSLDDSVDET
EAVKRYNDYKLDFRRQQMQDFFLAHKDEEWFRSKYHPDEVGKRRQEARGALQNRLRVF
LSLMETGWFDNLLLDIDKADAIVKMLDAAVIKMEGGTENDLRILEQEEEEEQAGKPGE
PSKKEEGRAGAGLGDGERKTNDKDEKKEDGKQAENDSSNDDKTKKSEGDGDKEEKKED
SEKEAKKSSKKRNRKHSGDDSFDEGSVSESESESESGQAEEEKEEAEEALKEKEKPKE
EEWEKPKDAAGLECKPRPLHKTCSLFMRNIAPNISRAEIISLCKRYPGFMRVALSEPQ
PERRFFRRGWVTFDRSVNIKEICWNLQNIRLRECELSPGVNRDLTRRVRNINGITQHK
QIVRNDIKLAAKLIHTLDDRTQLWASEPGTPPLPTSLPSQNPILKNITDYLIEEVSAE
EEELLGSSGGAPPEEPPKEGNPAEINVERDEKLIKVLDKLLLYLRIVHSLDYYNTCEY
PNEDEMPNRCGIIHVRGPMPPNRISHGEVLEWQKTFEEKLTPLLSVRESLSEEEAQKM
GRKDPEQEVEKFVTSNTQELGKDKWLCPLSGKKFKGPEFVRKHIFNKHAEKIEEVKKE
VAFFNNFLTDAKRPALPEIKPAQPPGPAQILPPGLTPGLPYPHQTPQGLMPYGQPRPP
ILGYGAGAVRPAVPTGGPPYPHAPYGAGRGNYDAFRGQGGYPGKPRNRMVRGDPRAIV
EYRDLDAPDDVDFF"
BASE COUNT 668 a 687 c 776 g 450 t
ORIGIN
1 gcgcttctcg ccacctcgcc acgaactcag cccgccacag aagcgcatga ggagagactg
61 ggatgagcac agctctgacc cataccacag tggctatgag atgccctatg ctgggggggg
121 tgggggccca acttatggcc cccctcagcc ctggggccac cctgacgtcc acatcatgca
181 gcaccatgtc ctgcctatcc aggccaggct gggcagcatt gcagagattg acctgggtgt
241 gccgccgccc gtgatgaaga ccttcaagga gtttctcctc tccctggatg actcggtgga
301 tgagacggag gccgtcaagc gctataatga ctacaagctg gatttccgga ggcaacagat
361 gcaggatttc ttcctggcgc acaaagatga ggagtggttt cggtctaagt accacccaga
421 tgaggtgggg aagcgtcggc aggaggcccg gggggccctg caaaaccgac tgagggtctt
481 cctgtccctc atggagactg gctggtttga taaccttctc ctggacatag acaaagctga
541 tgccattgtc aagatgctgg atgcagccgt gattaagatg gaaggaggca cggagaatga
601 tctccgcatc ctggagcagg aggaggagga ggagcaggca ggaaagcctg gggagcccag
661 caagaaagaa gaaggacggg ctggagcagg cctaggggac ggggagcgca aaaccaacga
721 caaggatgag aagaaggaag acggcaagca ggctgagaat gacagttcta atgatgacaa
781 aacaaagaag tcggagggtg atggggacaa ggaagagaag aaagaagact ccgagaagga
841 agccaaaaag agtagcaaga agcggaaccg gaagcacagt ggtgacgaca gctttgacga
901 gggcagcgtg tcagagtctg agtcggagtc agagagcggc caggctgagg aggagaagga
961 ggaggccgaa gaagcgctca aggagaagga gaagcccaag gaagaagaat gggagaagcc
1021 caaggacgcc gcggggctgg agtgcaagcc gcggccgctg cataagacct gctccctctt
1081 catgcgcaac atcgcgccca acatctcccg ggccgagatc atctcccttt gtaaaaggta
1141 cccaggcttt atgcgggtgg cgctctcaga gccccagcca gagaggaggt ttttccgtcg
1201 tggctgggtg accttcgacc gcagtgttaa cattaaagag atctgttgga acctgcagaa
1261 catccgtctc cgggagtgtg agctgagccc tggtgtgaac agggacctga cccggcgcgt
1321 tcgcaacatc aacggcatca cccagcacaa gcagattgtg cgcaacgaca tcaagctggc
1381 ggccaagctg atccacacgc tggatgacag gacacagctt tgggcctcag aaccagggac
1441 gcctcccctg cccacgagcc tgccctcgca aaacccgatc ttgaagaata tcaccgacta
1501 cctgatcgag gaagtaagcg ccgaggagga ggagctgctg gggagcagcg ggggcgctcc
1561 tcctgaggag cctcctaagg aagggaaccc ggcagagatc aacgtggagc gggatgagaa
1621 gttgattaag gtcttggaca agctcctcct ttacctgcgc atcgtgcatt ccttggatta
1681 ttacaacacc tgtgagtacc ccaacgagga cgagatgccc aatcgctgtg ggatcatcca
1741 cgttcggggg cccatgccac ccaaccgcat cagtcacggg gaagtgctgg agtggcagaa
1801 gacttttgag gagaagctca cgccgttgct gagtgtgcgg gagtcactct cagaggaaga
1861 ggcccagaag atggggcgca aagacccaga gcaggaagtg gagaagttcg tcacctccaa
1921 cacgcaggaa ctgggcaagg ataagtggct gtgtcctctc agtggcaaga aattcaaggg
1981 tcctgagttt gtgcgcaaac atatcttcaa caagcatgca gagaaaattg aggaagtgaa
2041 aaaggaagtc gcgtttttta acaacttcct cactgatgct aagcgcccag ctctgcctga
2101 gatcaagcca gcccagccac ctggccccgc ccagatactc cccccaggtt tgaccccagg
2161 actcccctac ccacaccaga ctccccaggg cctgatgccc tatggtcagc cccggccccc
2221 gatcttgggc tatggagctg gtgctgtccg ccctgcagtc cccacaggag gccctccata
2281 cccccatgcc ccgtatggtg ctggtcgagg gaactatgat gccttccgag gccagggagg
2341 ttatcctggg aaacctcgca acaggatggt tcgtggagac ccaagggcca ttgtggaata
2401 tcgggacctg gatgccccag acgatgttga tttcttttga gccgtccccc gttcctcagt
2461 cctgtatcat ccatacttgt actaccttgt cctatgaagc tctgagaatt ttttgtacga
2521 tcagccttac tgctaataaa agcacttcca cagggaaaaa aaaaaaaaaa aaaaaaaaaa
2581 a
//