LOCUS BC069242 2427 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens homeobox containing 1, mRNA (cDNA clone MGC:78502
IMAGE:5928365), complete cds.
ACCESSION BC069242
VERSION BC069242.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2427)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2427)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (26-APR-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 54 Row: h Column: 23
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 47059039.
FEATURES Location/Qualifiers
source 1..2427
/db_xref="H-InvDB:HIT000263396"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:78502 IMAGE:5928365"
/tissue_type="Brain, neuroblastoma"
/clone_lib="NIH_MGC_47"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2427
/gene="HMBOX1"
/gene_synonym="FLJ21616"
/gene_synonym="HNF1LA"
/gene_synonym="PBHNF"
/db_xref="GeneID:79618"
/db_xref="HGNC:HGNC:26137"
CDS 401..1663
/gene="HMBOX1"
/gene_synonym="FLJ21616"
/gene_synonym="HNF1LA"
/gene_synonym="PBHNF"
/codon_start=1
/product="homeobox containing 1"
/protein_id="AAH69242.1"
/db_xref="GeneID:79618"
/db_xref="HGNC:HGNC:26137"
/translation="MLSSFPVVLLETMSHYTDEPRFTIEQIDLLQRLRRTGMTKHEIL
HALETLDRLDQEHSDKFGRRSSYGGSSYGNSTNNVPASSSTATASTQTQHSGMSPSPS
NSYDTSPQPCTTNQNGRENNERLSTSNGKMSPTRYHANSMGQRSYSFEASEEDLDVDD
KVEELMRRDSSVIKEEIKAFLANRRISQAVVAQVTGISQSRISHWLLQQGSDLSEQKK
RAFYRWYQLEKTNPGATLSMRPAPIPIEDPEWRQTPPPVSATSGTFRLRRGSRFTWRK
ECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRR
KEIKRRANIEAAILESHGIDVQSPGGHSNSDDVDGNDYSEQDDSTSHSDHQDPISLAV
EMAAVNHTILALARQGANEIKTEALDDD"
BASE COUNT 714 a 532 c 594 g 587 t
ORIGIN
1 cctcaagtct ctttcctcac ttctttctct tcacttaaaa caattttttt ggaggggttt
61 tggggaggaa gtgagcggac gctggggatg ggtctcgtaa gcggccggat tgagaggagg
121 gaggaagcag ggggcttccg agtgggtgac ccagacgcgg gctgtggggt ggggcagttc
181 gtggggtccg gtcctggaaa ggcgtcgact gccccccaac tcttctggtt tcctctacga
241 tgagcggaag gtttgaatcc tggaggtggg gtctccggtg tggagttctg gaaactgtga
301 ggtgatttgc agctggtgga atggaacagt gaagaagcat tggaatggta gataacgcag
361 atcatctctg gaaaggatat tgatccgcct catgtaaagt atgcttagtt cctttccagt
421 ggttttgctg gaaaccatgt ctcattatac agatgaaccc agatttacca tagagcagat
481 agatctgctt cagcgacttc ggcgtactgg aatgactaaa catgaaattc tccatgcctt
541 ggaaactttg gaccgtcttg atcaagagca tagtgacaag tttggaagaa ggtccagcta
601 tggaggaagt tcatatggga atagtactaa caatgtccca gcatcttcct ctacagctac
661 agcttccaca cagacgcagc attcgggaat gtccccgtca cctagcaaca gttatgatac
721 ttccccacag ccttgcacta ccaatcaaaa tgggagggag aataatgagc gattatctac
781 atccaatgga aagatgtcac caactcgcta ccatgcaaac agcatgggtc agaggtcata
841 cagttttgaa gcctcagaag aggacctaga tgtagatgat aaagtggaag aattaatgag
901 gagggacagc agtgtgataa aagaggaaat caaagccttt cttgccaatc ggaggatttc
961 ccaagcagtt gttgcacagg taacaggtat cagtcagagc cggatctctc attggctgtt
1021 gcagcaggga tcagacctga gtgaacagaa gaaaagagca ttttaccgat ggtatcaact
1081 tgagaagaca aaccctggcg ctacactaag tatgagacca gcccccattc caatagagga
1141 ccctgaatgg agacaaacgc ctcccccagt ctctgccaca tctggtactt tccgactgcg
1201 acgagggagt cgatttacct ggagaaagga gtgcctggct gttatggaaa gttacttcaa
1261 tgagaatcaa tacccagatg aagcaaagag ggaagaaatt gcaaacgctt gcaatgcagt
1321 tatacagaag ccaggcaaaa agctgtcaga tctggaaaga gttacctccc tgaaagtata
1381 taattggttt gctaacagaa ggaaggagat caagaggaga gccaatattg aagcagcaat
1441 cctggagagt catgggatag atgtgcagag tccaggaggc cactcaaaca gtgatgatgt
1501 cgacgggaat gactactctg agcaggatga cagtacgagc catagtgacc accaagaccc
1561 catctcatta gctgtggaaa tggcagcagt caaccacact atcttggcat tggcccgaca
1621 aggagccaac gaaatcaaga cagaggccct ggatgatgac tgatcaggga ggttaaacat
1681 gacaagttaa cttagtttag acgtagcacc ttagcagact ttcctcggtc cttaacatgt
1741 gttcttacag tataacttgc agtttcttgt atgtcaggta gctgttaggg tcttgttctg
1801 tgaagatggc atggtgccct cagcctttgc atatactctc tcagtattaa ctcccagtaa
1861 ataataacca accaaccaac caaccaaact tccctctccc agcccccgag gctagaaaat
1921 cttgctgctc cgtcttagca ttccaagaaa gtgcttccag gtatttagat agccctcagt
1981 tctcaaatat tagactacgt gtaaaatctt gggtaccttt agattcttgt aacactagtc
2041 tgtactccct tttccttccc caagactgat aggatgcaag ctgaggtcgt ggcacaggaa
2101 tgacagacac catttgggga gtatccacag agtcaaagga acactagaat ccccacctca
2161 gcgtgaggat aattgatttc cagctgcaat aagccgtgcc tcattatagc cacactgtgg
2221 ctagattata cttctttggg tgctgtgcta agaatgtcaa tggaaaaagc cgatctcaga
2281 ttttgtttga agttaacatg cctgacacag acatcctttc ctctcacaag ctgtgtgact
2341 tagtagataa aatactgcct tctgcctttg ggaccatgat taaaaacaaa gacaaaaacc
2401 aaaagtcatt aaaaaaaaaa aaaaaaa
//