LOCUS BC069227 2725 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens tripartite motif-containing 11, mRNA (cDNA clone
MGC:78395 IMAGE:4875080), complete cds.
ACCESSION BC069227
VERSION BC069227.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2725)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2725)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (26-APR-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 54 Row: e Column: 12
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 24497621.
FEATURES Location/Qualifiers
source 1..2725
/db_xref="H-InvDB:HIT000263381"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:78395 IMAGE:4875080"
/tissue_type="Eye, normal, pigmented retinal epithelium"
/clone_lib="NIH_MGC_43"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..2725
/gene="TRIM11"
/gene_synonym="BIA1"
/gene_synonym="RNF92"
/db_xref="GeneID:81559"
/db_xref="HGNC:HGNC:16281"
/db_xref="MIM:607868"
CDS 247..1653
/gene="TRIM11"
/gene_synonym="BIA1"
/gene_synonym="RNF92"
/codon_start=1
/product="tripartite motif-containing 11"
/protein_id="AAH69227.1"
/db_xref="GeneID:81559"
/db_xref="HGNC:HGNC:16281"
/db_xref="MIM:607868"
/translation="MAAPDLSTNLQEEATCAICLDYFTDPVMTDCGHNFCRECIRRCW
GQPEGPYACPECRELSPQRNLRPNRPLAKMAEMARRLHPPSPVPQGVCPAHREPLAAF
CGDELRLLCAACERSGEHWAHRVRPLQDAAEDLKAKLEKSLEHLRKQMQDALLFQAQA
DETCVLWQKMVESQRQNVLGEFERLRRLLAEEEQQLLQRLEEEELEVLPRLREGAAHL
GQQSAHLAELIAELEGRCQLPALGLLQDIKDALRRVQDVKLQPPEVVPMELRTVCRVP
GLVETLRRFRGDVTLDPDTANPELILSEDRRSVQRGDLRQALPDSPERFDPGPCVLGQ
ERFTSGRHYWEVEVGDRTSWALGVCRENVNRKEKGELSAGNGFWILVFLGSYYNSSER
ALAPLRDPPRRVGIFLDYEAGHLSFYSATDGSLLFIFPEIPFSGTLRPLFSPLSSSPT
PMTICRPKGGSGDTLAPQ"
BASE COUNT 503 a 848 c 875 g 499 t
ORIGIN
1 gggatcccta cgtcccgcgt cccccgagcg ctcggagcct acgcgcccag cgctaccgaa
61 acccagagtc ctgcgccctg gagtccccgc gccccggagc ccgagcaccc gggagtcccg
121 agcctcgcgc cccggagtgc ccgagcctgc gccgccgcac ccggataccc cgcgtccccg
181 cgagctgccg aggccgcccg ccgccgcccc gcggacagta ccgccttcct cccctctgtc
241 cgcgccatgg ccgcccccga cctgtccacc aacctccagg aggaggccac ctgcgccatc
301 tgcctcgact acttcacgga tccggtgatg accgactgcg gccacaactt ctgccgcgag
361 tgcatccggc gctgctgggg ccagcccgag ggcccgtacg cgtgccccga gtgccgcgag
421 ctgtccccgc agaggaacct gcggcccaac cgcccgcttg ctaagatggc cgagatggcg
481 cggcgcctgc acccgccgtc gccggtcccg cagggcgtgt gccccgcgca ccgcgagcca
541 ctggccgcct tctgtggcga cgagctgcgc ctcctgtgtg cggcctgcga gcgctctggg
601 gagcactggg cgcaccgcgt gcggccgctg caggacgcgg ccgaagacct caaggcgaag
661 ctggagaagt cactggagca tctccggaag cagatgcagg atgcgttgct gttccaagcc
721 caggcggatg agacctgcgt cttgtggcag aagatggtgg agagccagcg gcagaacgtg
781 ctgggtgagt tcgagcgtct tcgccgtttg ctggcagagg aggagcagca gctgctgcag
841 aggctggagg aggaggagct ggaggtgctg ccccggctgc gggagggcgc agcccaccta
901 ggccagcaga gcgcccacct agctgagctc atcgccgagc tcgagggccg ctgccagctg
961 cctgctctgg ggctgctgca ggacatcaag gacgccctgc gcagggtcca ggatgtgaag
1021 ctgcagcccc cagaagttgt gcctatggag ctgaggaccg tgtgcagggt cccgggactg
1081 gtagagacac tgcggaggtt tcgaggggac gtgaccttgg acccggacac cgccaaccct
1141 gagctgatcc tgtctgaaga caggcggagc gtgcagcggg gggacctacg gcaggccctg
1201 ccggacagcc cagagcgctt tgaccccggc ccctgcgtgc tgggccagga gcgcttcacc
1261 tcaggccgcc actactggga ggtggaggtt ggggaccgca ccagctgggc cctgggggtg
1321 tgcagggaga acgtgaacag gaaggagaag ggcgagctgt ccgcgggcaa cggcttctgg
1381 atcctggtct tcctggggag ctattacaat tcctcggaac gggccttggc tccactccgg
1441 gacccaccca ggcgcgtggg gatctttctg gactacgagg ctggacatct ctctttctac
1501 agtgccaccg atgggtcact gctattcatc tttcccgaga tccccttctc ggggacgctg
1561 cggcccctct tctcacccct gtccagcagc ccgaccccga tgactatctg ccggccgaaa
1621 ggtgggtccg gggacaccct ggctccccag tgactcgggc cctcctggag gagtcctgtt
1681 gcctctcctg cccctccagg ccactgagtg ttttggccac ttggaggacc tgggaggagg
1741 gagtgtgtcc tttgagcaag aggaggaact cctggtgcct ttctgagcct gcgtgggaga
1801 accccaattc tagcactcca ggaaactgtg ggagagtgtg gggcaggctc cgtcctccct
1861 gggagacccc tccagccacc gggtgccact taatgccaac agcccttacc aaagctggga
1921 gccccattgc cccggcagct ctggcctgtg gttccagaag ctgagaaaac tccactgggg
1981 cttgcagaat ccagggttca cctaagctgc acagttcctg cagctttgcc agccccctga
2041 aagtcttgtg taccccacct ctgaagatgc tgggggaggc agctgggatg ggagccagcc
2101 ccatgcctgt ctgtgacccc acagtgggtg agagcccgtc acagtcctgg gtgtggctgc
2161 tctggaagaa ttaggaggca gccataataa gagtcttcag agagatgatg ggaggggcca
2221 gtgaggacag gaacagagag tagatgtcct ataataaagg ggcttctggg aggtgcctgg
2281 gcacagatgt ctgttcagca ggtgtgtggg cctagaggag agagcagagc ccagaaatgt
2341 cttttgcagg cccacgttct gacttgaagc tttcgtgggc atgttgccat tgggttttgc
2401 ccttgcaaag gcttcctagg tctccagtgg cccctcagga cccagggtcc cagctgctgc
2461 ttggggatgt gcactgctgg ccgccggcct tgcagtctct ctaccctggg gaggaacagt
2521 ggcttctcag agcctggggc atacagaaga aggcaggagt tgatttttgt gttgggtttg
2581 gggtttcttt gtcctcaagg tactgttctg tttctcttta cccctctgct ttatttattg
2641 taagcattcc cacgttaaat aaactttggc tgttgtctac aaaaaaaaaa aaaaaaaaaa
2701 aaaaaaaaaa aaaaaaaaaa aaaaa
//