LOCUS BC069033 1912 bp mRNA linear HUM 26-JUN-2007
DEFINITION Homo sapiens piggyBac transposable element derived 1, mRNA (cDNA
clone IMAGE:6286015), partial cds.
ACCESSION BC069033
VERSION BC069033.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1912)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1912)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-APR-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: CGAP (Stanford)
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 54 Row: k Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 25777740.
FEATURES Location/Qualifiers
source 1..1912
/db_xref="H-InvDB:HIT000263216"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:6286015"
/tissue_type="Liver, hepatocellular carcinoma"
/clone_lib="NIH_MGC_100"
/lab_host="DH10B"
/note="Vector: pOTB7"
gene 1..>1912
/gene="PGBD1"
/gene_synonym="dJ874C20.4"
/gene_synonym="HUCEP-4"
/gene_synonym="SCAND4"
/db_xref="GeneID:84547"
/db_xref="HGNC:HGNC:19398"
CDS 267..>1912
/gene="PGBD1"
/gene_synonym="dJ874C20.4"
/gene_synonym="HUCEP-4"
/gene_synonym="SCAND4"
/codon_start=1
/product="PGBD1 protein"
/protein_id="AAH69033.1"
/db_xref="GeneID:84547"
/db_xref="HGNC:HGNC:19398"
/translation="MYEALPGPAPENEDGLVKVKEEDPTWEQVCNSQEGSSHTQEICR
LRFRHFCYQEAHGPQEALAQLRELCHQWLRPEMHTKEQIMELLVLEQFLTILPKELQP
CVKTYPLESGEEAVTVLENLETGSGDTGQQASVYIQGQDMHPMVAEYQGVSLECQSLQ
LLPGITTLKCEPPQRPQGNPQEVSGPVPHGSAHLQEKNPRDKAVVPVFNPVRSQTLVK
TEEETAQAVAAEKWSHLSLTRRNLCGNSAQETVMSLSPMTEEIVTKDRLFKAKQETSE
EMEQSGEASGKPNRECAPQIPCSTPIATERTVAHLNTLKDRHPGDLWARMHISSLEYA
AGDITRKGRKKDKARVSELLQGLSFSGDSDVEKDNEPEIQPAQKKLKVSCFPEKSWTK
RDIKPNFPSWSALDSGLLNLKSEKLNPVELFELFFDDETFNLIVNETNNYASQKNVSL
EVTVQEMRCVFGVLLLSGFMRHPRREMYWEVSDTDQNLVRDAIRRDRFELIFSNLHFA
DNGHLDQKDKFTKLRPLIKQMNKNFLLYAPLEKKKKKKKK"
BASE COUNT 579 a 424 c 471 g 438 t
ORIGIN
1 ctacgtcttt gttgtgcgcg ttcctgaact tttggtccat taaccaacaa ttagacacgc
61 cggtattcag tgcctggcgc ggtgctagat gctgggtgta atctcagaaa aatacattca
121 ggggcgcgcc tgagggtgct ggctgctggc atctcaggtg ctttacgtgc attcgtgaag
181 aagcccatca gtatttcttg aataccagat ctctatttct gaatatagac cccaagctaa
241 gtgaagcttt agcctctaag ctcaacatgt atgaagcttt gccaggccct gctcctgaaa
301 atgaagatgg ccttgtgaaa gtgaaggagg aagatcccac ctgggagcag gtgtgcaact
361 cacaggaggg cagctcccac actcaggaga tttgccgcct gcgctttcgg cacttctgct
421 accaggaggc tcacggaccc caggaagctc tggcccaact ccgagaactt tgtcatcaat
481 ggctgagacc ggagatgcac accaaggaac agataatgga actgctggtg ctggagcagt
541 tcctgaccat cctgcccaag gagctccagc cctgtgtgaa gacatatcct ctggagagtg
601 gagaggaggc agtgacagtg ctggagaatc tagagacagg aagtggagac acaggacaac
661 aggcctctgt ctatattcag ggacaggaca tgcacccaat ggtggcagaa tatcaaggag
721 tctctttgga gtgtcagagc ctccagctcc tgcctgggat aaccaccctg aagtgtgaac
781 ctccacagcg tcctcaaggg aacccccaag aagtgagtgg gcctgttccc cacggatcag
841 ctcatctcca ggaaaaaaac cccagagaca aggctgtagt gcctgtgttt aacccagtca
901 ggtcccagac attggtgaag actgaggaag aaacagccca ggccgttgct gcagagaagt
961 ggtcacatct gagtctgact cggaggaacc tctgtgggaa ctcagctcag gagacagtta
1021 tgagcctcag tccgatgact gaagaaattg taactaaaga tagattgttt aaagcaaagc
1081 aagaaacttc tgaagaaatg gaacaaagtg gagaagcctc aggaaagccc aacagagagt
1141 gtgcacccca gattccttgt agtactccta ttgctactga aaggacagtt gcacatttga
1201 acactctgaa ggaccgtcac ccaggtgatt tgtgggcccg catgcacatc tcatccctgg
1261 aatatgctgc aggagacatt acccgaaaag ggagaaaaaa agacaaagct cgagtgagtg
1321 aactgctcca aggcctctca ttctctggtg actcagatgt ggaaaaagat aatgagcctg
1381 agatccagcc tgctcaaaag aagttaaagg tatcatgttt cccagaaaag agttggacca
1441 aaagagacat taaacccaat tttccaagct ggtcagcact ggattctgga cttttgaatc
1501 tcaagagcga aaagttgaac ccagtagagc tttttgaatt attttttgat gatgaaacat
1561 tcaacttaat tgtcaatgaa accaataatt atgcttctca gaaaaatgtc agcttggaag
1621 tcacagttca ggaaatgagg tgtgtgtttg gtgtcttact tttgagtgga tttatgaggc
1681 atcctagaag ggaaatgtat tgggaagtct ctgacaccga tcagaacctg gttagagatg
1741 caatcagaag ggacagattt gaattgattt tctcaaacct gcactttgca gataatggcc
1801 acctagatca aaaagataag tttacaaagt tgagacctct cataaaacaa atgaataaaa
1861 atttcctctt gtatgctccc ctggaaaaaa aaaaaaaaaa aaaaaaaaaa aa
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