LOCUS BC068993 1901 bp mRNA linear HUM 19-MAR-2009
DEFINITION Homo sapiens synovial sarcoma translocation gene on chromosome
18-like 1, mRNA (cDNA clone MGC:78386 IMAGE:5094932), complete cds.
ACCESSION BC068993
VERSION BC068993.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1901)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1901)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-APR-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Louis M. Staudt, M.D., Ph.D.
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 54 Row: f Column: 18
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 39777611
The stop codon of the CDS annotated on this record is located > 55
bases upstream of a splice junction, and therefore the mRNA is
predicted to be subject to nonsense-mediated mRNA decay (NMD).
FEATURES Location/Qualifiers
source 1..1901
/db_xref="H-InvDB:HIT000263177"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:78386 IMAGE:5094932"
/tissue_type="Lymph, Burkitt lymphoma"
/clone_lib="NIH_MGC_8"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1901
/gene="SS18L1"
/gene_synonym="CREST"
/gene_synonym="LP2261"
/db_xref="GeneID:26039"
/db_xref="HGNC:HGNC:15592"
/db_xref="MIM:606472"
CDS 410..1609
/gene="SS18L1"
/gene_synonym="CREST"
/gene_synonym="LP2261"
/codon_start=1
/product="SS18L1 protein"
/protein_id="AAH68993.1"
/db_xref="GeneID:26039"
/db_xref="HGNC:HGNC:15592"
/db_xref="MIM:606472"
/translation="MQSLSTEARYVPRVPQHRDQISPRSPQHGGQICPRSPLHRGQIC
PRSPPARRYQQILHRNLVYLATIADSNQNMQSLLPAPPTQNMNLGPGALTQSGSSQGL
HSQGSLSDAISTGLPPSSLLQGQIGNGPSHVSMQQTAPNTLPTTSMSISGPGYSHAGP
ASQGVPMQGQGTIGNYVSRTNINMQSNPVSMMQQQAATSHYSSAQGGSQHYQGQSSIA
MMGQGSQGSSMMGQRPMAPYRPSQQGSSQQYLGQEEYYGEQYSHSQGAAEPMGQQYYP
DGHGDYAYQQSSYTEQSYDRSFEESTQHYYEGGNSQYSQQQAGYQQGAAQQQTYSQQQ
YPSQQSYPGQQQGYGSAQGAPSQYPGYQQGQGQQYGSYRAPQTAPSAQQQRPYGYEQG
QYGNYQQ"
BASE COUNT 446 a 612 c 534 g 309 t
ORIGIN
1 ccacctcgat gaccacgggc tgagccccgc gccgccacca tgtccgtggc cttcgcgtct
61 gcccggccaa gaggcaaagg ggaggttacg cagcaaacca tccagaagtt tttgaagaat
121 gccggccagt catcgagtgc ccttggtttg ggtacaaggt gcgttttcct aacttgcggg
181 tctgaaagtg cgtccattcc cccttcacgc ctggttgcgg tttcggcgga ctagaatttc
241 tacgcagaag tctccctcag gatcagaccg tagcccttcc ggaaacctcc atgatgctgg
301 acgagaacca ccacctgatc cagtgcatcc tggagtacca gagcaagggc aagacggccg
361 agtgcacgca gtgagtgccc gccatacacc ggaacacttg gagggtgtca tgcagagtct
421 aagcacagag gccagatacg tcccaagagt cccccagcac agagatcaga taagtcccag
481 gagtccccag cacggaggcc agatatgtcc caggagtccc ctgcacagag gccagatatg
541 tcccaggagt cccccagcac ggaggtacca gcagatcctg caccggaacc tggtatacct
601 ggccacgatc gcagactcca accagaacat gcagtccctg cttcctgccc cgcccacgca
661 gaacatgaac ctgggccctg gagccctgac tcagagcggc tccagccagg gcctgcactc
721 tcagggcagc ctgagtgacg ccatcagcac gggcctgcca ccctcctccc tcctgcaggg
781 ccagattggc aacgggccga gccacgtgtc catgcagcag acggcgccta acacgctgcc
841 caccacctcc atgagcatct ctgggcccgg ctacagccac gcgggacccg cctcgcaggg
901 cgtccccatg caggggcaag gcaccatcgg caactacgtg tctcggacca acatcaacat
961 gcagtccaac ccagtctcca tgatgcagca gcaggcggcc acgtcgcact acagctcggc
1021 gcagggcggc agccagcact accagggcca gtcgtccatc gccatgatgg ggcagggcag
1081 ccaggggagc agcatgatgg ggcagcggcc catggcgccc taccggccct cccagcaagg
1141 ctcttcccag cagtacctgg gccaggagga gtactatggc gagcagtaca gccacagcca
1201 gggcgccgcg gagcccatgg gccagcagta ctaccccgac ggccatggcg attacgccta
1261 ccagcagtca tcctacacgg agcagagcta cgaccggtcc ttcgaggagt ccacgcagca
1321 ctactatgag gggggaaact cccagtacag ccagcagcag gccgggtacc agcagggtgc
1381 cgcgcagcag cagacgtact cccagcagca gtaccccagc cagcagagct accccgggca
1441 gcagcagggc tacgggtctg cccagggagc cccgtcacag taccccggct accagcaagg
1501 ccaaggccag cagtacggaa gctaccgagc accgcagaca gcgccgtctg cccagcagca
1561 gcggccctac ggctatgaac agggccagta tggaaattac cagcagtaag ggacacacat
1621 tctggctgga gcccttgtgg tagcgtgttc atccaggggc cggatgggct ggcggcagct
1681 ctggtgaatt gtgacatgtt ggttacctgt tcgcccagtg ccacgtctgc atgtgaagcg
1741 tgctcatttc atgctgggac ctacttgctc agatctccaa gcaagcattt cttttctttt
1801 agggatgtct gaaagtcaca tccagttaca ttactgtgtt ctttttaatg aaaagtaaag
1861 gttttatata gagaaaaaaa aaaaaaaaaa aaaaaaaaaa a
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