LOCUS BC068975 4668 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens ubiquitin specific peptidase 38, mRNA (cDNA clone
MGC:70375 IMAGE:6067501), complete cds.
ACCESSION BC068975
VERSION BC068975.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4668)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4668)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (05-APR-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 140 Row: g Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 31559774.
FEATURES Location/Qualifiers
source 1..4668
/db_xref="H-InvDB:HIT000263170"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:70375 IMAGE:6067501"
/tissue_type="Testis, embryonal carcinoma"
/clone_lib="NIH_MGC_92"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..4668
/gene="USP38"
/gene_synonym="HP43.8KD"
/gene_synonym="KIAA1891"
/db_xref="GeneID:84640"
/db_xref="HGNC:HGNC:20067"
CDS 482..3610
/gene="USP38"
/gene_synonym="HP43.8KD"
/gene_synonym="KIAA1891"
/codon_start=1
/product="ubiquitin specific peptidase 38"
/protein_id="AAH68975.1"
/db_xref="GeneID:84640"
/db_xref="HGNC:HGNC:20067"
/translation="MDKILEGLVSSSHPLPLKRVIVRKVVESAEHWLDEAQCEAMFDL
TTRLILEGQDPFQRQVGHQVLEAYARYHRPEFESFFNKTFVLGLLHQGYHSLDRKDVA
ILDYIHNGLKLIMSCPSVLDLFSLLQVEVLRMVCERPEPQLCARLSDLLTDFVQCIPK
GKLSITFCQQLVRTIGHFQCVSTQERELREYVSQVTKVSNLLQNIWKAEPATLLPSLQ
EVFASISSTDASFEPSVALASLVQHIPLQMITVLIRSLTTDPNVKDASMTQALCRMID
WLSWPLAQHVDTWVIALLKGLAAVQKFTILIDVTLLKIELVFNRLWFPLVRPGALAVL
SHMLLSFQHSPEAFHLIVPHVVNLVHSFKNDGLPSSTAFLVQLTELIHCMMYHYSGFP
DLYEPILEAIKDFPKPSEEKIKLILNQSAWTSQSNSLASCLSRLSGKSETGKTGLINL
GNTCYMNSVIQALFMATDFRRQVLSLNLNGCNSLMKKLQHLFAFLAHTQREAYAPRIF
FEASRPPWFTPRSQQDCSEYLRFLLDRLHEEEKILKVQASHKPSEILECSETSLQEVA
SKAAVLTETPRTSDGEKTLIEKMFGGKLRTHIRCLNCRSTSQKVEAFTDLSLAFCPSS
SLENMSVQDPASSPSIQDGGLMQASVPGPSEEPVVYNPTTAAFICDSLVNEKTIGSPP
NEFYCSENTSVPNESNKILVNKDVPQKPGGETTPSVTDLLNYFLAPEILTGDNQYYCE
NCASLQNAEKTMQITEEPEYLILTLLRFSYDQKYHVRRKILDNVSLPLVLELPVKRIT
SFSSLSESWSVDVDFTDLSENLAKKLKPSGTDEASCTKLVPYLLSSVVVHSGISSESG
HYYSYARNITSTDSSYQMYHQSEALALASSQSHLLGRDSPSAVFEQDLENKEMSKEWF
LFNDSRVTFTSFQSVQKITSRFPKDTAYVLLYKKQHSTNGLSGNNPTSGLWINGDPPL
QKELMDAITKDNKLYLQEQELNARARALQAASASCSFRPNGFDDNDPPGSCGPTGGGG
GGGFNTVGRLVF"
BASE COUNT 1298 a 1028 c 996 g 1346 t
ORIGIN
1 cccagcactc tccgtgacag cgcctcctga ctcagcccag gaccggcttc ttctcacgac
61 ctgctggaga ctggacgccc acacctgacc cggaactcgg aggcgtgctt cctccacccg
121 ccggctagca gccccgggcc ctgagctccc gccgacgccg ctggggggcc cgacaggccc
181 ctcggcgctg atgctgagtg ggatcgaggg cccggggcgg cggcggagta cgggcctctg
241 gcgccttagg ccagccgcag gtgtcggttc ttaggctctc caggctcgct agctcccgcc
301 ccggcttgga tgggtctccc tgcgccataa atgtggctgc tgaggcggcg gtggccgtgg
361 cccgtcgcgc tgctgctgcg gcgctccaag ttcatctccg ccccggggct ctcctgcccc
421 acctcggggc tgccgccacc cgctccttat cccctggccc tggccttgca gcgtggcgac
481 aatggacaag atcctggagg gccttgtgag ttcctcgcat cccctgcccc tcaagcgggt
541 gattgtgcgg aaggtggtgg aatcggcgga gcactggcta gacgaggcgc agtgcgaggc
601 catgtttgac ctgacgaccc ggctcatcct ggagggccag gaccctttcc agcggcaggt
661 ggggcaccag gtgctggagg cctacgcacg ataccaccgg ccagagttcg agtccttctt
721 caacaagacc ttcgtgttgg gcctccttca tcagggctac cactctctgg acaggaagga
781 tgtagccatc ctggactaca ttcacaacgg cctgaagctg attatgagct gtccgtcggt
841 gctggatctc tttagcctcc tgcaggtaga ggtgttacgg atggtgtgtg agaggccgga
901 gccgcagctc tgtgcccgac tgagcgacct tctgaccgac tttgtgcaat gcatccccaa
961 ggggaaattg tccatcacgt tctgtcaaca gctggttcga acgataggcc atttccagtg
1021 cgtgtccacc caggaaagag agctgcggga atatgtctcc caggtgacaa aagtgagtaa
1081 cttgctgcag aacatctgga aggccgagcc tgccacacta ctgccttccc tgcaagaagt
1141 ttttgcaagc atctcttcca cagatgcatc atttgaacct tctgtagcat tggcaagcct
1201 tgtgcagcat attcctcttc agatgattac agttctcatc aggagcctta ctacggatcc
1261 aaatgtaaaa gatgcaagta tgacccaagc cctttgcaga atgattgact ggctatcctg
1321 gccattggct cagcatgtgg atacatgggt aattgcactc ctgaaaggac tggcagctgt
1381 ccagaagttt actattttga tagatgttac tttgctgaaa atagaactgg tttttaatcg
1441 actttggttt cctcttgtga gacctggtgc tcttgcagtt ctttctcaca tgctgcttag
1501 ctttcagcat tctccagagg cgttccattt gattgttcct catgtggtta atttggttca
1561 ttctttcaaa aatgatggtc tgccttcaag tacagccttc ttagtacaat taacagaatt
1621 gatacactgt atgatgtatc attattctgg atttccagat ctctatgaac ctattctgga
1681 ggcaataaag gattttccta agcccagtga agagaagatt aagttaattc tcaatcaaag
1741 tgcctggact tctcaatcca attctttggc gtcttgcttg tctagacttt ctggaaaatc
1801 tgaaactggg aaaactggtc ttattaacct aggaaataca tgttatatga acagtgttat
1861 acaagccttg tttatggcca cagatttcag gagacaagta ttatctttaa atctaaacgg
1921 gtgcaattca ttaatgaaaa aattacagca tctttttgcc tttctggccc atacacagag
1981 ggaagcatac gcacctcgga tattctttga ggcttccaga cctccatggt ttactcccag
2041 atcacagcaa gactgttctg aatacctcag atttctcctt gacaggctcc atgaagaaga
2101 aaagatcttg aaagttcagg cctcacacaa gccttctgaa attctggaat gcagtgaaac
2161 ttctttacag gaagtagcta gtaaagcagc agtactaaca gagacccctc gtacaagtga
2221 cggtgagaag actttaatag aaaaaatgtt tggaggaaaa ctacgaactc acatacgttg
2281 tttgaactgc aggagtacct cacaaaaagt ggaagccttt acagatcttt cgcttgcctt
2341 ttgtccttcc tcttctttgg aaaacatgtc tgtccaagat ccagcatcat cacccagtat
2401 acaagatggt ggtctaatgc aagcctctgt acccggtcct tcagaagaac cagtagttta
2461 taatccaaca acagctgcct tcatctgtga ctcacttgtg aatgaaaaaa ccataggcag
2521 tcctcctaat gagttttact gttctgaaaa cacttctgtc cctaacgaat ctaacaagat
2581 tcttgttaat aaagatgtac ctcagaaacc aggaggtgaa accacacctt cagtaactga
2641 cttactaaat tattttttgg ctccagagat tcttactggt gataaccaat attattgtga
2701 aaactgtgcc tctctgcaaa atgctgagaa aactatgcaa atcacggagg aacctgaata
2761 ccttattctt actctcctga gattttcata tgatcagaag tatcatgtga gaaggaaaat
2821 tttagacaat gtatcactgc cactggtttt ggagttgcca gttaaaagaa ttacttcttt
2881 ctcttcattg tcagaaagtt ggtctgtaga tgttgacttc actgatctta gtgagaacct
2941 tgctaaaaaa ttaaagcctt cagggactga tgaagcttcc tgcacaaaat tggtgcccta
3001 tctattaagt tccgttgtgg ttcactctgg tatatcctct gaaagtgggc attactattc
3061 ttatgccaga aatatcacaa gtacagactc ttcatatcag atgtaccacc agtctgaggc
3121 tctggcatta gcatcctccc agagtcattt actagggaga gatagtccca gtgcagtttt
3181 tgaacaggat ttggaaaata aggaaatgtc aaaagaatgg tttttattta atgacagtag
3241 agtgacattt acttcatttc agtcagtcca gaaaattacg agcaggtttc caaaggacac
3301 agcttatgtg cttttgtata aaaaacagca tagtactaat ggtttaagtg gtaataaccc
3361 aaccagtgga ctctggataa atggagaccc acctctacag aaagaactta tggatgctat
3421 aacaaaagac aataaactat atttacagga acaagagttg aatgctcgag cccgggccct
3481 ccaagctgca tctgcttcat gttcatttcg gcccaatgga tttgatgaca acgacccacc
3541 aggaagctgt ggaccaactg gtggaggggg tggaggagga tttaatacag ttggcagact
3601 cgtattttga tcctgagaga gtccaaaatg cactggtcac gaaacgtcta atactatgac
3661 tgttaaaatg tcagactata acaaatatct atcttttatt tttcattaga cccttatact
3721 tcaagagaac acactcagtg cttgttttta ttttcttgac acatttatta acaaaatgca
3781 tcatggaaaa aaaatctacc tcttaaaatt ccatttgctt ttatggttag acatgcttga
3841 ccaaaaatgt tcagaagaaa atatgtacct ggtccctaat taagctgcgt taaatttggt
3901 agaagcattt aaatggtcta tcttcagttt tactgaacaa aaaatgtaat ttatttagca
3961 ttctttataa aagaattgat gctagaggta aaaaaaaata cttgttttta aaaaatcctt
4021 tacgtcttgt gtaattaccc cattattaaa ttcaagtcct tgaaaatcaa ctagagatta
4081 taaagtctct aaagaaggca ataacaaaat ttatcaagat atagtacttt tcagtttttg
4141 tttagtgtct tcagcatcac tgtgtctgta tttcaagtac aaatgttttt aaaaaggatt
4201 ctttatacat atgtgctgaa ttgattttaa gaaagttgca tgatcctgta ggagcaacat
4261 ttttacctaa aaaatgctaa ctttatagta tttctaattg ttcaaggatt ttaaaattct
4321 atttcaggga gtatatcttc tgtggttttg aaggaggtga gttctgtatg tgccttgcag
4381 tactgtaatt caaaaatagg aatctttggc tgcaaaattt taatgaaatg ttaggaagta
4441 attttcgtgc taacattaaa attataactt tttgaaaggt aatagatttt ccagaagtaa
4501 aatctgatgg ttctaaatca atcaatgtga tagttcattt ttaactctta gaagaattca
4561 gaggaaatta acccagctaa gtaaaaaatc tgtcttgatt ttgttactta ttcctcagaa
4621 tattaaacat tgatcacata tttttagagt tttaaaaaaa aaaaaaaa
//