LOCUS BC068577 2355 bp mRNA linear HUM 04-AUG-2008
DEFINITION Homo sapiens chromosome 11 open reading frame 87, mRNA (cDNA clone
MGC:87557 IMAGE:4818568), complete cds.
ACCESSION BC068577
VERSION BC068577.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2355)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2355)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-APR-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 167 Row: d Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 46559746.
FEATURES Location/Qualifiers
source 1..2355
/db_xref="H-InvDB:HIT000263133"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:87557 IMAGE:4818568"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2355
/gene="C11orf87"
/gene_synonym="LOH11CR1A"
/db_xref="GeneID:399947"
/db_xref="HGNC:HGNC:33788"
CDS 377..970
/gene="C11orf87"
/gene_synonym="LOH11CR1A"
/codon_start=1
/product="chromosome 11 open reading frame 87"
/protein_id="AAH68577.1"
/db_xref="GeneID:399947"
/db_xref="HGNC:HGNC:33788"
/translation="MSARAPKELRLALPPCLLNRTFASPNASGSGNTGARGPGAVGSG
TCITQVGQQLFQSFSSTLVLIVLVTVIFCLIVLSLSTFHIHKRRMKKRKMQRAQEEYE
RDHCSGSRGGGGLPRPGRQAPTHAKETRLERQPRDSPFCAPSNASSLSSSSPGLPCQG
PCAPPPPPPASSPQGAHAASSCLDTAGEGLLQTVVLS"
BASE COUNT 508 a 664 c 548 g 635 t
ORIGIN
1 tgggcggcgg cggcagcagc gcggctcggt ctctggtcca ttcactccac gctttctgca
61 gccgccactg cagccgcgcg gcgggggctc cctccttgca gccagccggc ggtccagcct
121 ggtgcctctg caaaggaaag gggagcgtgg agacgtgttc gaggtggtat cggcgaggat
181 ctctcgggcg ccgctcactc cttggtcgcc ttgcttgcca gcagttgctc ccttagtcct
241 tggctcgctc gcacaccccc tcccgctaca gggagcagtt ttgggtggcg tgggctccgt
301 cctcttcttg gctggtagga acggtgtgcc caagagggga agcctagtgg gcctggcccc
361 tcccagcccc gcgccaatga gtgccagggc gccgaaggag ctgaggctgg cgttgccgcc
421 gtgtctcctc aaccggacct ttgcttcccc caacgccagc ggcagcggca acacgggtgc
481 ccgcggccca ggcgcagtag gcagcggcac ctgcatcacg caggtgggac agcagctctt
541 ccagtccttc tcctccacgc tggtgctgat tgtcctggtt accgtcatct tctgcctcat
601 cgtgctgtcc ctctccactt tccacatcca caagcgtagg atgaagaagc ggaagatgca
661 gagggctcag gaggaatatg agcgggatca ctgcagcggc agccgcggtg gcggggggct
721 gccccgacct ggcaggcagg ccccaaccca cgcaaaggaa acccggctgg agaggcagcc
781 ccgggactct cccttctgcg ccccttccaa cgcctcgtcg ttgtcctctt cgtcccctgg
841 cctcccgtgc cagggtccct gtgctcctcc gcctccaccg ccagcctcca gtccccaagg
901 agcacacgca gcttcctcct gtttggacac agctggcgag ggccttttgc aaacggtggt
961 actgtcctga tcgtctagcc cctctcgttc cccgtcctcg tttccagcat ctttgccacc
1021 cttgcttttt tccttcttcc ttccttttcc attttcctct ggcccctctt tcctcttcct
1081 ggtttcctta cctgccctcc ccttactctt gtttctcctc cgccgaggca ctgtgcggta
1141 tttgtaaata ttgggcgagg aaagtctcgg aagaagaaat aacgctgata ataatacttt
1201 attaatattt atagtaatta ttataatact aataacacaa tccaagcgca tgacaaatca
1261 cataatttct aactgtcaat ggaggatgca tcttcccttt ccaccccgcg ctcacctcaa
1321 ttaggaggag aaaccgcaca agctaccaaa tatataaaag gcattgattc ccggagcaaa
1381 gggaggggag ggggcccggt aatgtacata gctgtcaagt taagatttag tttccttcct
1441 tcccctctga cccctaagct ttcacttttc ctttagcttc cctttcctcc ccattcccac
1501 cctcagccgg gctcaggcaa tagtatatta taaagaaaat gtctacatta agcaccagga
1561 ctgcaagagg ccatagagaa tagtccccgg aaagtgttta tgacaggtac ccctcgccag
1621 tcggcccatt tctcaccctt tggttaacca ttacattttc caggacagag catttaattt
1681 actttttaaa atgaccctcg ctggccgagc ataagtacgt taaaatcttt aaatgagttt
1741 tttttaaaaa gctaacgctt tcattccctg ccccgccccc acccgtacac ctttgacttg
1801 tgacattttc aggatttaca aaggatctgg gagctgtcca gccaggtctg gtgctgaagt
1861 cgcctcaccg ttctgattac ttcctctagt tgtgaaggca gaggaggggc tgttttggaa
1921 agtgactatt ctggcttttg gttgggttct ttcttctttt tctacaatcg agttagcgtg
1981 tactattggt tttcttatta ttaaacattg cataagttac cttttttgta aaaaaaaaaa
2041 agtattaggt gatgtgcagt actgaaagtg cagtatctaa ccaactagaa cgtttgtttt
2101 atttttagaa caagtgcacc tttgttatat atttagtata ttggtaccaa atacagaaaa
2161 aaactatagt tctgtactat gtcctccaaa ctgtatatta ttgttcttaa tttccagctg
2221 ttgatataat ggttaccact ggatgagaaa ttcagtggtg cagacctggc ttctgctgtt
2281 tccagaagtg ttcttttgta ccttattctg tagtagactg ttataaaaag atgacacaca
2341 aaaaaaaaaa aaaaa
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