LOCUS BC068482 3127 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens calmin (calponin-like, transmembrane), mRNA (cDNA
clone MGC:87136 IMAGE:4375469), complete cds.
ACCESSION BC068482
VERSION BC068482.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3127)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3127)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-APR-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 167 Row: b Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 19923598.
FEATURES Location/Qualifiers
source 1..3127
/db_xref="H-InvDB:HIT000263039"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:87136 IMAGE:4375469"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3127
/gene="CLMN"
/gene_synonym="calmin"
/gene_synonym="FLJ12383"
/gene_synonym="KIAA1188"
/db_xref="GeneID:79789"
/db_xref="HGNC:HGNC:19972"
CDS 66..3074
/gene="CLMN"
/gene_synonym="calmin"
/gene_synonym="FLJ12383"
/gene_synonym="KIAA1188"
/codon_start=1
/product="calmin (calponin-like, transmembrane)"
/protein_id="AAH68482.1"
/db_xref="GeneID:79789"
/db_xref="HGNC:HGNC:19972"
/translation="MAAHEWDWFQREELIGQISDIRVQNLQVERENVQKRTFTRWINL
HLEKCNPPLEVKDLFVDIQDGKILMALLEVLSGRNLLHEYKSSSHRIFRLNNIAKALK
FLEDSNVKLVSIDAAEIADGNPSLVLGLVWNIILFFQIKELTGNLSRNSPSSSLSPGS
GGTDSDSSFPPTPTAERSVAISVKDQRKAIKALLAWVQRKTRKYGVAVQDFAGSWRSG
LAFLAVIKAIDPSLVDMKQALENSTRENLEKAFSIAQDALHIPRLLEPEDIMVDTPDE
QSIMTYVAQFLERFPELEAEDIFDSDKEVPIESTFVRIKETPSEQESKVFVLTENGER
TYTVNHETSHPPPSKVFVCDKPESMKEFRLDGVSSHALSDSSTEFMHQIIDQVLQGGP
GKTSDISEPSPESSILSSRKENGRSNSLPIKKTVHFEADTYKDPFCSKNLSLCFEGSP
RVAKESLRQDGHVLAVEVAEEKEQKQESSKIPESSSDKVAGDIFLVEGTNNNSQSSSC
NGALESTARHDEESHSLSPPGENTVMADSFQIKVNLMTVEALEEGDYFEAIPLKASKF
NSDLIDFASTSQAFNKVPSPHETKPDEDAEAFENHAEKLGKRSIKSAHKMKDSPEPQV
KMDKHEPHQDSGEEAEGCPSAPEETPVDKKPEVHEKAKRKSTRPHYEEEGEDDDLQGV
GEELSSSPPSSCVSLETLGSHSEEGLDFKPSPPLSKVSVIPHDLFYFPHYEVPLAAVL
EAYVEDPEDLKNEEMDLEEPEGYMPDLDSREEEADGSQSSSSSSVPGESLPSASDQVL
YLSRGGVGTTPASEPAPLAPHEDHQQRETKENDPMDSHQSQESPNLENIANPLEENVT
KESISSKKKEKRKHVDHVESSLFVAPGSVQSSDDLEEDSSDYSIPSRTSHSDSSIYLR
RHTHRSSESDHFSYVQLRNAADLDDRRNRILTRKANSSGEAMSLGSHSPQSDSLTQLV
QQPDMMYFILFLWLLVYCLLLFPQLDVSRL"
BASE COUNT 905 a 782 c 775 g 665 t
ORIGIN
1 ggtagccagg ctctccgcgc ccgccgcccg cgccgcgctg gcccgggctc tcccgcccgc
61 gcttcatggc tgcacacgag tgggactggt tccaacgcga ggagctcatc gggcagatta
121 gcgacatccg agtgcagaac ctgcaagttg agagggaaaa tgtgcagaag aggaccttta
181 cacgatggat aaatctacat ctagaaaagt gcaacccacc tctagaagtt aaagatttat
241 tcgtcgatat acaagatggc aaaatcctaa tggctttgtt agaagtcctg tctgggcgga
301 atctgctgca cgaatacaaa tcctcgtcgc atcgtatttt tcggttgaac aacatagcga
361 aagcacttaa gtttttggaa gatagcaatg taaaactggt tagcattgat gcagcagaaa
421 tagcagatgg caacccttct ttggttcttg ggctggtatg gaacataatc ctcttcttcc
481 agattaagga gctcacaggc aacctcagca gaaactctcc atcttccagc ttgtcccctg
541 gctcaggggg cacagactca gactcatcct tcccacccac acccactgca gagaggagcg
601 tggcaatatc ggtgaaagac cagaggaagg ctatcaaggc cctgttggcg tgggtgcaga
661 ggaaaacgag aaagtatggc gtggcggtgc aggactttgc gggcagttgg aggagtgggc
721 tggctttcct ggcggtgatc aaggccattg accccagcct ggtggacatg aaacaggccc
781 tggaaaattc cacacgagaa aatctagaga aggctttcag catcgcacag gatgccctgc
841 acatccccag gctcctggag ccagaagaca tcatggttga cacaccagac gagcagtcta
901 tcatgactta cgtggcacag tttctagaac gttttccgga gttggaagcc gaagatattt
961 tcgattcaga taaagaagtt cctatcgaat ccacttttgt tcgcatcaaa gaaactcctt
1021 ctgaacagga gagcaaagtc ttcgttctga ctgaaaatgg ggagcgtacc tacactgtta
1081 accatgaaac cagccaccca ccaccctcca aagtctttgt ctgtgacaag cccgagagca
1141 tgaaggaatt ccgcctggat ggtgtttcca gccatgcgct gtcagacagc tccaccgagt
1201 tcatgcacca gattattgac caggtcctgc aagggggccc aggtaagacc agcgacatca
1261 gtgagccatc tccagaatcc tccattttat catccagaaa ggagaacggg aggtccaact
1321 ctttgccgat caagaaaaca gttcactttg aggctgacac ctacaaggat cctttctgca
1381 gtaagaacct gtccctttgc tttgaaggga gcccaagagt ggcaaaggaa tcattgaggc
1441 aggatggaca tgtcttggca gttgaggttg ctgaggaaaa ggaacagaaa caggaatcct
1501 cgaagattcc agaatcctcc tctgacaagg tcgctggtga catttttttg gtggagggca
1561 caaacaataa ttctcagtct tcttcctgta atggtgcttt agagagtaca gcccgccacg
1621 atgaagaaag tcactctctt tcacccccag gagaaaatac tgtgatggcc gattccttcc
1681 agatcaaggt taacctgatg actgtagaag ctttagagga gggagactat tttgaagcca
1741 tcccattaaa agcctcaaaa tttaacagcg acctaataga ttttgcttct accagccagg
1801 ctttcaacaa agttccttca cctcatgaga caaaacctga cgaggatgct gaggcttttg
1861 agaatcatgc tgaaaaacta ggtaaaagga gtattaaatc tgctcacaaa atgaaggatt
1921 cgccagagcc tcaagttaag atggacaaac atgaacctca tcaggactcc ggagaagaag
1981 ctgaaggctg tccttcagcc ccagaagaga caccagtgga taaaaagcca gaggtgcatg
2041 aaaaggccaa gagaaagtcc acccgtcctc attatgagga agagggagaa gacgatgacc
2101 tccagggtgt gggcgaggaa ttatcttcca gccccccaag cagctgtgtc agcttggaga
2161 cccttgggag tcacagcgaa gaaggcctgg atttcaagcc ctccccaccc ctctcaaagg
2221 tttccgtcat tccccacgac ctcttctatt tcccacacta tgaggttccc ctggctgcag
2281 ttttggaggc ttatgtagaa gacccggagg atctaaaaaa tgaagaaatg gatctcgaag
2341 agccagaggg ctatatgcca gacctggact ccagggagga ggaggccgat ggctctcaga
2401 gcagctccag ttcctcggtg ccaggagaga gcctccccag tgccagcgac caggtgctgt
2461 atctcagcag gggtggtgtg ggtaccacac cagcctcaga acccgctcca ctggcccccc
2521 atgaggacca ccagcaaagg gagaccaaag agaatgaccc catggacagc catcagtccc
2581 aggaatcccc aaacctggaa aacatagcaa accccctaga agaaaatgta acgaaagaat
2641 caatcagtag taaaaaaaag gaaaaaagga aacatgtgga ccacgtagaa agttcactat
2701 ttgtagcacc aggaagtgtt caatcctcag atgacctaga agaagacagt agcgactaca
2761 gcattccttc caggactagt cacagtgact ccagcattta ccttcgacga catactcata
2821 ggtcttcgga atcggatcat tttagctatg ttcagttgag gaacgcagca gatctggatg
2881 acagaagaaa ccgaatatta accaggaagg ccaacagctc aggagaagcc atgtcactgg
2941 ggagccacag cccgcagagt gactccctga cacagcttgt ccagcagccg gatatgatgt
3001 attttattct cttcctgtgg ctcctggtgt actgcttgct gctcttccca caactggatg
3061 ttagcaggct ctgatacgtg tgtctggata ataaaaaaga caggaccctt aaaaaaaaaa
3121 aaaaaaa
//