LOCUS BC068454 3257 bp mRNA linear HUM 21-JUL-2005
DEFINITION Homo sapiens programmed cell death 6 interacting protein, mRNA
(cDNA clone MGC:87040 IMAGE:4830724), complete cds.
ACCESSION BC068454
VERSION BC068454.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3257)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3257)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-APR-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 167 Row: h Column: 8
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 48255927.
FEATURES Location/Qualifiers
source 1..3257
/db_xref="H-InvDB:HIT000263012"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:87040 IMAGE:4830724"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..3257
/gene="PDCD6IP"
/gene_synonym="AIP1"
/gene_synonym="Alix"
/gene_synonym="DRIP4"
/gene_synonym="HP95"
/gene_synonym="MGC17003"
/db_xref="GeneID:10015"
/db_xref="MIM:608074"
CDS 140..2761
/gene="PDCD6IP"
/gene_synonym="AIP1"
/gene_synonym="Alix"
/gene_synonym="DRIP4"
/gene_synonym="HP95"
/gene_synonym="MGC17003"
/codon_start=1
/product="PDCD6IP protein"
/protein_id="AAH68454.1"
/db_xref="GeneID:10015"
/db_xref="MIM:608074"
/translation="MATFISMQLKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAE
ELSKLRRAAVGRPLDKHEGALETLLRYYDQICSIEPKFPFSENQICLTFTWKDAFDKG
SLFGGSVKLALASLGYEKSCVLFNCAALASQIAAEQNLDNDEGLKIAAKHYQFASGAF
LHIKETVLSALSREPTVDISPDTVGTLSLIMLAQAQEVFFLKATRDKMKDAIIAKLAN
QAADYFGDAFKQCQYKDTLPKYFYFQEVFPVLAAKHCIMQANAEYHQSILAKQQKKFG
EEIARLQHAAELIKTVASRYDEYVNVKDFSDKINRALAAAKKDNDFIYHDRVPDLKDL
DPIGKATLVKSTPVNVPISQKFTDLFEKMVPVSVQQSLAAYNQRKADLINRSIAQMRE
ATTLANGVLASLNLPAAIEDVSGDTVPQSILTKSRSVIEQGGIQTVDQLIKELPELLQ
RNREILDESLRLLDEEEATDNDLRAKFKERWQRTPSNELYKPLRAEGTNFRTVLDKAV
QADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANPAKTMQGSEVVNVLKSLLSNLDE
VKKEREGLENDLKSVNFDMTSKFLTALAQDGVINEEALSVTELDRVYGGLTTKVQESL
KKQEGLLKNIQVSHQEFSKMKQSNNEANLREEVLKNLATAYDNFVELVANLKEGTKFY
NELTEILVRFQNKCSDIVFARKTERDELLKDLQQSIAREPSAPSIPTPAYQSSPAGGH
APTPPTPAPRTMPPTKPQPPARPPPPVLPANRAPSATAPSPVGAGTAAPAPSQTPGSA
PPPQAQGPPYPTYPGYPGYCQMPMPMGYNPYAYGQYNMPYPPVYHQSPGQAPYPGPQQ
PSYPFPQPPQQSYYPQQ"
BASE COUNT 980 a 724 c 713 g 840 t
ORIGIN
1 ggtggacccg gaacgcaggc ggagcgcaag tctgtcagcc agtcagtccg ccagtccgcc
61 agcccagtac ctctctctcc tcggccctcg taagctgtcc gcggtctgtt tggcccgaac
121 ggcggcggag gcgctgatca tggcgacatt catctcgatg cagctgaaaa agacctcaga
181 ggtggacctg gccaagccgc tggtgaagtt catccagcag acttacccaa gcggcgggga
241 agagcaggcc cagtactgcc gcgcggcgga ggagctcagc aagctgcgcc gcgccgcagt
301 cggtcgtccg ctggacaagc acgagggcgc gctcgagacg ctcctgagat attatgatca
361 gatttgttct attgaaccca aattcccatt ttctgaaaat cagatctgct tgacatttac
421 ctggaaggat gctttcgata aaggttcact ttttggaggc tctgtaaaac tggctcttgc
481 aagcttagga tatgaaaaga gctgtgtgtt gttcaattgt gcagccttag ctagccaaat
541 tgcagcagaa cagaacctgg ataatgatga aggattgaaa atcgctgcta aacattacca
601 gtttgctagt ggtgcctttt tacatattaa agagacggtt ttatctgcct taagtcgaga
661 gccgaccgtg gacatatctc cagatactgt tgggaccctc agtcttatta tgctggcaca
721 ggctcaagaa gtattttttt taaaagccac aagagataaa atgaaagatg ccatcatagc
781 taaattggct aatcaggctg cagattattt tggtgatgct ttcaaacagt gtcaatacaa
841 agatactctc cccaagtatt tttatttcca ggaggtgttc cctgtcttgg ctgcaaagca
901 ctgtatcatg caggccaatg ctgagtacca tcagtctatc ctggcaaaac agcagaagaa
961 atttggagaa gaaattgcaa ggttacagca tgcagcagaa ctgattaaaa cagtggcatc
1021 tcgctatgat gaatatgtta atgtgaagga tttttctgac aaaatcaatc gtgcccttgc
1081 tgcagcaaag aaggataatg acttcattta tcatgatcga gttccagacc ttaaagatct
1141 agatcctatt ggcaaagcca cacttgtgaa atctaccccg gtcaatgtac ccatcagtca
1201 gaaatttact gatctgtttg agaagatggt tcccgtgtca gtacagcagt ctttggctgc
1261 ctataatcag aggaaagccg atttgattaa cagatcaatt gctcagatga gagaagccac
1321 cactttggca aatggggtgc tagcttccct taatcttcca gcagcaattg aagatgtgtc
1381 tggagacact gtacctcagt ctatattgac taaatccaga tctgtgattg aacagggagg
1441 catccagact gttgatcagt tgattaaaga actgcctgaa ttactgcaac gaaatagaga
1501 aatcctagat gagtcattaa ggttgttgga tgaagaagaa gcaaccgata atgatttaag
1561 agcaaaattt aaggaacgtt ggcaaaggac accatccaat gaactgtata agcctttaag
1621 agcagaggga accaacttca gaacagtttt agataaagct gtgcaggcag atggacaagt
1681 gaaagaatgc taccagtctc atcgtgacac catcgtgctt ttgtgtaagc cagagcctga
1741 gctgaatgct gccatccctt ctgctaatcc agcaaagacc atgcagggca gtgaggttgt
1801 aaatgtctta aaatccttat tgtcaaatct tgatgaagta aagaaggaaa gagagggtct
1861 ggagaatgac ttgaaatctg tgaattttga catgacaagc aagtttttga cagccctggc
1921 tcaagatggt gtgataaatg aagaagctct ttctgttact gaactagatc gagtctatgg
1981 aggtcttaca actaaagtcc aagaatctct aaagaaacag gagggacttc ttaaaaatat
2041 tcaggtctca catcaggaat tttcaaaaat gaaacaatct aataatgaag ctaacttaag
2101 agaagaagtt ttgaagaatt tagctactgc atatgacaac tttgttgaac ttgtagctaa
2161 tttgaaggaa ggcacaaagt tttacaatga gttgactgaa atcctggtca ggttccagaa
2221 caaatgcagt gatatagttt ttgcacggaa gacagaaaga gatgaactct taaaggactt
2281 gcaacaaagc attgccagag aacctagtgc tccttcaatt cctacacctg cgtatcagtc
2341 ctcaccagca ggaggacatg caccaactcc tccaactcca gcgccaagaa ccatgccgcc
2401 tactaagccc cagcccccag ccaggcctcc accacctgtg cttccagcaa atcgagctcc
2461 ttctgctact gctccatctc cagtgggggc tgggactgct gcgccagctc catcacaaac
2521 gcctggctca gctcctcctc cacaggcgca gggaccaccc tatcccacct atccaggata
2581 tcctgggtat tgccaaatgc ccatgcccat gggctataat ccttatgcgt atggccagta
2641 taatatgcca tatccaccag tgtatcacca gagtcctgga caggctccat acccgggacc
2701 ccagcagcct tcatacccct tccctcagcc cccacagcag tcttactatc cacagcagta
2761 atatgtctgc tcagcagctc agctgattca gatcagaggg aaagaaatac caaccctgca
2821 ataagtgtac taaactctac gctctggtta atgtaatgta ctctcctgga ctgaatgcag
2881 tgtataattt ctgtctacag ctagaagctg tgccccagtt ccacatttga ttacacatgt
2941 gagatttgct gctgttgcag tataaacact aggtataata ggatttgaaa ttgcattaca
3001 gttcataaaa attgaaaatg agaaattaaa cctgcaagtg aaacatttga aacgattata
3061 ctttctacat aagacatggt tgggacatca gatacttaca aagatggttt aagtatggat
3121 actagagaaa attaagtttt ctttctcttt ggtttattga tttggtttaa tttccattat
3181 gctattttgc ataatcaagg cactgtaaat cttataattt taaaataaat tacttaagaa
3241 caaaaaaaaa aaaaaaa
//