LOCUS BC068445 2814 bp mRNA linear HUM 21-JUL-2005
DEFINITION Homo sapiens chromosome 9 open reading frame 72, mRNA (cDNA clone
MGC:86985 IMAGE:5298741), complete cds.
ACCESSION BC068445
VERSION BC068445.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2814)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2814)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-APR-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 168 Row: f Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 37039614.
FEATURES Location/Qualifiers
source 1..2814
/db_xref="H-InvDB:HIT000263003"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:86985 IMAGE:5298741"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2814
/gene="C9orf72"
/gene_synonym="MGC23980"
/db_xref="GeneID:203228"
CDS 57..1502
/gene="C9orf72"
/gene_synonym="MGC23980"
/codon_start=1
/product="C9orf72 protein"
/protein_id="AAH68445.1"
/db_xref="GeneID:203228"
/translation="MSTLCPPPSPAVAKTEIALSGKSPLLAATFAYWDNILGPRVRHI
WAPKTEQVLLSDGEITFLANHTLNGEILRNAESGAIDVKFFVLSEKGVIIVSLIFDGN
WNGDRSTYGLSIILPQTELSFYLPLHRVCVDRLTHIIRKGRIWMHKERQENVQKIILE
GTERMEDQGQSIIPMLTGEVIPVMELLSSMKSHSVPEEIDIADTVLNDDDIGDSCHEG
FLLNAISSHLQTCGCSVVVGSSAEKVNKIVRTLCLFLTPAERKCSRLCEAESSFKYES
GLFVQGLLKDSTGSFVLPFRQVMYAPYPTTHIDVDVNTVKQMPPCHEHIYNQRRYMRS
ELTAFWRATSEEDMAQDTIIYTDESFTPDLNIFQDVLHRDTLVKAFLDQVFQLKPGLS
LRSTFLAQFLLVLHRKALTLIKYIEDDTQKGKKPFKSLRNLKIDLDLTAEGDLNIIMA
LAEKIKPGLHSFIFGRPFYTSVQERDVLMTF"
BASE COUNT 879 a 493 c 544 g 898 t
ORIGIN
1 ggtggcgagt ggatatctcc ggagcattta gataatgtga cagttggaat gcagtgatgt
61 cgactctttg cccaccgcca tctccagctg ttgccaagac agagattgct ttaagtggca
121 aatcaccttt attagcagct acttttgctt actgggacaa tattcttggt cctagagtaa
181 ggcacatttg ggctccaaag acagaacagg tacttctcag tgatggagaa ataacttttc
241 ttgccaacca cactctaaat ggagaaatcc ttcgaaatgc agagagtggt gctatagatg
301 taaagttttt tgtcttgtct gaaaagggag tgattattgt ttcattaatc tttgatggaa
361 actggaatgg ggatcgcagc acatatggac tatcaattat acttccacag acagaactta
421 gtttctacct cccacttcat agagtgtgtg ttgatagatt aacacatata atccggaaag
481 gaagaatatg gatgcataag gaaagacaag aaaatgtcca gaagattatc ttagaaggca
541 cagagagaat ggaagatcag ggtcagagta ttattccaat gcttactgga gaagtgattc
601 ctgtaatgga actgctttca tctatgaaat cacacagtgt tcctgaagaa atagatatag
661 ctgatacagt actcaatgat gatgatattg gtgacagctg tcatgaaggc tttcttctca
721 atgccatcag ctcacacttg caaacctgtg gctgttccgt tgtagtaggt agcagtgcag
781 agaaagtaaa taagatagtc agaacattat gcctttttct gactccagca gagagaaaat
841 gctccaggtt atgtgaagca gaatcatcat ttaaatatga gtcagggctc tttgtacaag
901 gcctgctaaa ggattcaact ggaagctttg tgctgccttt ccggcaagtc atgtatgctc
961 catatcccac cacacacata gatgtggatg tcaatactgt gaagcagatg ccaccctgtc
1021 atgaacatat ttataatcag cgtagataca tgagatccga gctgacagcc ttctggagag
1081 ccacttcaga agaagacatg gctcaggata cgatcatcta cactgacgaa agctttactc
1141 ctgatttgaa tatttttcaa gatgtcttac acagagacac tctagtgaaa gccttcctgg
1201 atcaggtctt tcagctgaaa cctggcttat ctctcagaag tactttcctt gcacagtttc
1261 tacttgtcct tcacagaaaa gccttgacac taataaaata tatagaagac gatacgcaga
1321 agggaaaaaa gccctttaaa tctcttcgga acctgaagat agaccttgat ttaacagcag
1381 agggcgatct taacataata atggctctgg ctgagaaaat taaaccaggc ctacactctt
1441 ttatctttgg aagacctttc tacactagtg tgcaagaacg agatgttcta atgacttttt
1501 aaatgtgtaa cttaataagc ctattccatc acaatcatga tcgctggtaa agtagctcag
1561 tggtgtgggg aaacgttccc ctggatcata ctccagaatt ctgctctcag caattgcagt
1621 taagtaagtt acactacagt tctcacaaga gcctgtgagg ggatgtcagg tgcatcatta
1681 cattgggtgt ctcttttcct agatttatgc ttttgggata cagacctatg tttacaatat
1741 aataaatatt attgctatct tttaaagata taataatagg atgtaaactt gaccacaact
1801 actgtttttt tgaaatacat gattcatggt ttacatgtgt caaggtgaaa tctgagttgg
1861 cttttacaga tagttgactt tctatctttt ggcattcttt ggtgtgtaga attactgtaa
1921 tacttctgca atcaactgaa aactagagcc tttaaatgat ttcaattcca cagaaagaaa
1981 gtgagcttga acataggatg agctttagaa agaaaattga tcaagcagat gtttaattgg
2041 aattgattat tagatcctac tttgtggatt tagtccctgg gattcagtct gtagaaatgt
2101 ctaatagttc tctatagtcc ttgttcctgg tgaaccacag ttagggtgtt ttgtttattt
2161 tattgttctt gctattgttg atattctatg tagttgagct ctgtaaaagg aaattgtatt
2221 ttatgtttta gtaattgttg ccaacttttt aaattaattt tcattatttt tgagccaaat
2281 tgaaatgtgc acctcctgtg ccttttttct ccttagaaaa tctaattact tggaacaagt
2341 tcagatttca ctggtcagtc attttcatct tgttttcttc ttgctaagtc ttaccatgta
2401 cctgctttgg caatcattgc aactctgaga ttataaaatg ccttagagaa tatactaact
2461 aataagatct ttttttcaga aacagaaaat agttccttga gtacttcctt cttgcatttc
2521 tgcctatgtt tttgaagttg ttgctgtttg cctgcaatag gctataagga atagcaggag
2581 aaattttact gaagtgctgt tttcctaggt gctactttgg cagagctaag ttatcttttg
2641 ttttcttaat gcgtttggac cattttgctg gctataaaat aactgattaa tataattcta
2701 acacaatgtt gacattgtag ttacacaaac acaaataaat attttattta aaattcaaaa
2761 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaacaa aaaaaaaaaa aaaa
//