LOCUS BC068221 1073 bp mRNA linear HUM 03-JAN-2005
DEFINITION Homo sapiens ubiquitin protein ligase E3B, mRNA (cDNA clone
IMAGE:6573521), complete cds.
ACCESSION BC068221
VERSION BC068221.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1073)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1073)
AUTHORS Director MGC Project.
TITLE Direct Submission
JOURNAL Submitted (29-MAR-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Steve Jones, Sarah Barber, Mabel Brown-John, Yaron Butterfield,
Andy Chan, Steve S. Chand, William Chow, Alison Cloutier, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Amara Masson, Mike R. Mayo, Josh Moran, Ryan Morin,
Teika Olson, Diana Palmquist, Anca Petrescu, Anna Liisa Prahbu,
Parvaneh Saeedi, JR Santos, Angelique Schnerch, Ursula Skalska,
Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie
Schein, Asim Siddiqui, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 54 Row: o Column: 20
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 35493958
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1073
/db_xref="H-InvDB:HIT000262977"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:6573521"
/tissue_type="Prostate, carcinoma"
/clone_lib="NIH_MGC_40"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1073
/gene="UBE3B"
/gene_synonym="DKFZp586K2123"
/gene_synonym="DKFZp686A1051"
/db_xref="GeneID:89910"
/db_xref="MIM:608047"
CDS 252..986
/gene="UBE3B"
/gene_synonym="DKFZp586K2123"
/gene_synonym="DKFZp686A1051"
/codon_start=1
/product="UBE3B protein"
/protein_id="AAH68221.1"
/db_xref="GeneID:89910"
/db_xref="MIM:608047"
/translation="MFTLSQTSRAWFIDRARQAREERLVQKERERAAVVIQAHVRSFL
CRSRLQRDIRREIDDFFKADDPESTKRSALCIFKIARKLLFLFRIKEDNERFEKLCRS
ILSSMDAENEPKVWYVSLACSKDLTLLWIQQIKNILWYCCDFLKQLKPEILQDSRLIT
LYLTMLVTFTDTSTWKILRGKGESLRPAMNHICANIMGHLNQHGFYSVLQCCDGLFPD
LVSYAPHNNPVRWSVGRSWYDWQLSR"
BASE COUNT 300 a 237 c 272 g 264 t
ORIGIN
1 ggcggtagtg cgtcggctgc tgccccgggt ctggcagaac tcgggtgttt tgggctgaga
61 cagtggcagc tgcggccccg accccaagtg cggggacctc cggcgaataa aggtcggcct
121 gcggaaaaaa taacaagctt ttctgaagtg agaagctgtt ctcagccacg agtcctgtgc
181 aagatcacta atgattacct ggcatttctg cgacacaggc aggtcctcag ggtttgtgca
241 agtttgcaaa catgttcacc ctgtctcaga cctcgagagc atggttcatc gatagagccc
301 gtcaggcacg agaagaaagg cttgtgcaga aggaacggga gcgggcagct gttgtgatcc
361 aggcccatgt ccggagtttt ctctgtcgga gtcgactgca gagagatatc aggagagaga
421 ttgatgactt ttttaaagca gatgaccctg agtccactaa aagaagtgca ctttgtattt
481 tcaagattgc caggaaactg ctgttcctat tcagaatcaa agaggataat gagagatttg
541 agaagttgtg tcgcagcatc ctgagcagca tggatgctga gaatgagcct aaggtgtggt
601 atgtgtccct ggcttgttct aaggacctca ccctcctttg gattcaacag atcaagaaca
661 ttttgtggta ctgctgtgat tttctcaagc agctcaagcc tgaaatcctg caggactccc
721 gactcatcac cctgtacctc acgatgcttg tcaccttcac agacacttca acgtggaaaa
781 ttcttcgggg aaaaggtgaa agtcttcgac cagcgatgaa ccacatttgt gcaaatataa
841 tgggacatct caaccagcat ggattttatt ctgtgctgca gtgctgtgat gggctgtttc
901 ctgatttggt ttcatatgct cctcacaaca accctgtgag gtggtccgtt ggcagaagct
961 ggtatgactg gcagttgtct cgctagagga accttctact tcataccata attaaacggc
1021 ttctaaaata aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaa
//