LOCUS BC068066 1557 bp mRNA linear HUM 19-JUN-2006
DEFINITION Homo sapiens zinc finger protein 85, mRNA (cDNA clone
IMAGE:5014772), complete cds.
ACCESSION BC068066
VERSION BC068066.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1557)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1557)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (24-MAR-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: DCTD/DTP
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 54 Row: e Column: 22
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1557
/db_xref="H-InvDB:HIT000262926"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5014772"
/tissue_type="Lung, small cell carcinoma"
/clone_lib="NIH_MGC_7"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..1557
/gene="ZNF85"
/gene_synonym="HPF4"
/gene_synonym="HTF1"
/db_xref="GeneID:7639"
/db_xref="HGNC:HGNC:13160"
/db_xref="MIM:603899"
CDS 126..389
/gene="ZNF85"
/gene_synonym="HPF4"
/gene_synonym="HTF1"
/codon_start=1
/product="ZNF85 protein"
/protein_id="AAH68066.1"
/db_xref="GeneID:7639"
/db_xref="HGNC:HGNC:13160"
/db_xref="MIM:603899"
/translation="MGPLTFRDVAIEFSLKEWQCLDTAQRNLYRNVMLENYRNLVFLG
ITVSKPDLITCLEQGKEAWSMKRHEIMVAKPTESYSVTQSGMQ"
BASE COUNT 415 a 307 c 307 g 528 t
ORIGIN
1 gctctaggtc ttgttttccc tgctttgtgt tttctgctcg tggacgccca gcctctgtgg
61 ccctgtggcc tgcaggtatt gggagatcca cagctaagac gccgggaccc cctggaagcc
121 tagaaatggg accattgaca tttagggatg tggccataga attctctctg aaggagtggc
181 aatgcctgga cactgcacag cggaatttat atagaaatgt gatgttagag aactacagaa
241 acctggtctt cctgggtatt actgtttcta agccagacct gatcacttgt ctggagcaag
301 ggaaagaggc ctggagtatg aagagacatg agatcatggt ggccaaaccc acagaatctt
361 actctgtcac ccagtctgga atgcagtagc aagattttgg cccactgcag cctcaacctt
421 ctggggtcaa gtgattgttc cacctcagcc tcccgagtag cttggactac agacatgcag
481 tactatgcct ggctaatttt ttgattattt gtagagacag agtctcactt tgttgcccag
541 tctagtctca aacttctggc tccaaatgat cctcctacct tggtctccca aagtgttggg
601 attataggta tgagcctgtt cacccagcca gtattcttaa atttaataag atttgttatg
661 tgtcctaaca gaatacacaa ggtgcaaata agaatgttgt gtattctctt gcttttgact
721 gaaaagtttt gtacatgtct gttaatccta gttggtctgt gatgtggttt agatgttcgt
781 gttcttcaaa tcttatgctg caatgtaatc ctcactgttg gatgtggaac ctggtgggag
841 atgtttagat catggggcaa atttctcatg aatggctttg tactatcctc ttggtaatca
901 aaaagtttac actctgttaa ttcagatgag agctgcctca ttaaaagaac ctggcccctt
961 cacctcacat ttggttctgt cttttactat gtgatatgtc cagttactgt tggccttcca
1021 ccattgtgga agcttactga aaccttccac cagaggcaga tgccggcaca cacttcttgt
1081 acagtctgcc caacgatgaa ccaaacaagc ctttttattt ataaattatc cactctcagg
1141 tattcctcta tgtgcaaaat aatatattct gtaacgttgt ctaagttttc tgttttctta
1201 ttgatctttt ctctgaattt tctatttatt attaaaaatg gggtcttgat gtctacaatt
1261 attatgttgc tatgtatttc ttgtttcact tttgtcaata tttgctttac gtattttgga
1321 gccctaatgt tgtatataca tatacacata aataaatagg cataatagtt ttagattcct
1381 ggtaaattga tccattttac tattgtataa tatcagtctt tgtctcatgc tagtacttga
1441 cttaaagcat ataatgtcta atataattat gagtgtctta ctcaattgtg gttatatttg
1501 catgtaataa aaagtttttc cattctgtta caaaaaaaaa aaaaaaaaaa aaaaaaa
//