LOCUS BC068009 1815 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 47, mRNA (cDNA
clone MGC:74686 IMAGE:6142837), complete cds.
ACCESSION BC068009
VERSION BC068009.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1815)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1815)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (22-MAR-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 140 Row: i Column: 20.
FEATURES Location/Qualifiers
source 1..1815
/db_xref="H-InvDB:HIT000262884"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:74686 IMAGE:6142837"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1815
/gene="DDX47"
/gene_synonym="DKFZp564O176"
/gene_synonym="E4-DBP"
/gene_synonym="FLJ30012"
/gene_synonym="HQ0256"
/gene_synonym="MSTP162"
/db_xref="GeneID:51202"
/db_xref="HGNC:HGNC:18682"
CDS 5..1372
/gene="DDX47"
/gene_synonym="DKFZp564O176"
/gene_synonym="E4-DBP"
/gene_synonym="FLJ30012"
/gene_synonym="HQ0256"
/gene_synonym="MSTP162"
/codon_start=1
/product="DEAD (Asp-Glu-Ala-Asp) box polypeptide 47"
/protein_id="AAH68009.1"
/db_xref="GeneID:51202"
/db_xref="HGNC:HGNC:18682"
/translation="MAAPEEHDSPTEASQPIVEEEETKTFKDLGVTDVLCEACDQLGW
TKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTR
ELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENT
KGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRA
ALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNT
QRTALLLRNLGFTAIPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDV
VVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDVELFQRIEHLIGKKLPGFPTQ
DDEVMMLTERVAEAQRFARMELREHGEKKKRSREDAGDNDDTEGAIGVRNKVAGGKMK
KRKGR"
BASE COUNT 530 a 379 c 417 g 489 t
ORIGIN
1 caagatggcg gcacccgagg aacacgattc tccgaccgaa gcgtcccagc cgattgtgga
61 agaggaggaa actaaaacat ttaaagacct gggtgtgaca gatgtgttgt gtgaagcttg
121 tgaccagttg ggatggacaa aacccaccaa gatccagatt gaagctattc ctttggcctt
181 acaaggtcgt gatatcattg ggcttgcaga aactggctct ggaaagacag gcgcctttgc
241 tttgcccatt ctaaacgcac tgctggagac cccgcagcgt ttgtttgccc tagttcttac
301 cccgactcgg gagctggcct ttcagatctc agagcagttt gaagccctgg ggtcctctat
361 tggagtgcag agtgctgtga ttgtaggtgg aattgattca atgtctcaat ctttggccct
421 tgcaaaaaaa ccacatataa taatagcaac tcctggtcga ctgattgacc acttggaaaa
481 tacgaaaggt ttcaacttga gagctctcaa atacttggtc atggatgaag ccgaccgaat
541 actgaatatg gattttgaga cagaggttga caagatcctc aaagtgattc ctcgagatcg
601 gaaaacattc ctcttctctg ccaccatgac caagaaggtt caaaaacttc agcgagcagc
661 tctgaagaat cctgtgaaat gtgccgtttc ctctaaatac cagacagttg aaaaattaca
721 gcaatattat atttttattc cctctaaatt caaggatacc tacctggttt atattctaaa
781 tgaattggct ggaaactcct ttatgatatt ctgcagcacc tgtaataata cccagagaac
841 agctttgcta ctgcgaaatc ttggcttcac tgccatcccc ctccatggac aaatgagtca
901 gagtaagcgc ctaggatccc ttaataagtt taaggccaag gcccgttcca ttcttctagc
961 aactgacgtt gccagccgag gtttggacat acctcatgta gatgtggttg tcaactttga
1021 cattcctacc cattccaagg attacatcca tcgagtaggt cgaacagcta gagctgggcg
1081 ctccggaaag gctattactt ttgtcacaca gtatgatgtg gaactcttcc agcgcataga
1141 acacttaatt gggaagaaac taccaggttt tccaacacag gatgatgagg ttatgatgct
1201 gacagaacgc gtcgctgaag cccaaaggtt tgcccgaatg gagttaaggg agcatggaga
1261 aaagaagaaa cgctcgcgag aggatgctgg agataatgat gacacagagg gtgctattgg
1321 tgtcaggaac aaggtggctg gaggaaaaat gaagaagcgg aaaggccgtt aatcactttt
1381 atgaaggctc gagttctgct gttctgtaaa agagaattgg agaatgaaac ctgctccaac
1441 agagatcatg agactgaaat tggtcagaat tgtgtccaga atgtgctcag ctaattcagt
1501 attcttcccc attctgggtt ggagtttact gcagagtaat tcttacagtg ctgatgtcaa
1561 gactgttact gttcttcgac tttgattcct tgctcatgac atgagtaggg tgtgctcttc
1621 tgtcacttca cacagacctt ttgccttttt tagctgcaag tcaaggacta ggttgatgat
1681 gcccatgacc tgtaattgta aagaagcttg gacatctgca aatgatattt aaaccatctt
1741 ggcttgtgct ttattcaaac taatgtgaaa caataaattt aaatattatt tttaaaagaa
1801 aaaaaaaaaa aaaaa
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