LOCUS BC068008 2294 bp mRNA linear HUM 06-APR-2004
DEFINITION Homo sapiens trinucleotide repeat containing 4, mRNA (cDNA clone
IMAGE:6142488), partial cds.
ACCESSION BC068008
VERSION BC068008.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2294)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2294)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (22-MAR-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 140 Row: i Column: 16
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 6005724.
FEATURES Location/Qualifiers
source 1..2294
/db_xref="H-InvDB:HIT000262883"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:6142488"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene <1..2294
/gene="TNRC4"
/gene_synonym="BRUNOL1"
/gene_synonym="CAGH4"
/gene_synonym="CELF3"
/gene_synonym="ERDA4"
/db_xref="GeneID:11189"
CDS <1..1225
/gene="TNRC4"
/gene_synonym="BRUNOL1"
/gene_synonym="CAGH4"
/gene_synonym="CELF3"
/gene_synonym="ERDA4"
/codon_start=2
/product="TNRC4 protein"
/protein_id="AAH68008.1"
/db_xref="GeneID:11189"
/translation="RDSALKAQSALHEQKTLPGMNRPIQVKPADSESRGDRKLFVGML
GKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRT
LPGASSSLVVKFADTEKERGLRRMQQVATQLGMFSPIALQFGAYSAYTQALMQQQAAL
VAAHSAYLSPMATMAAVQMQHMAAINANGLIATPITPSSGTSTPPAIAATPVSAIPAA
LGVNGYSPVPTQPTGQPAPDALYPNGVHPYPAQSPAAPVDPLQQAYAGMQHYTAAYPA
AYSLVAPAFPQPPALVAQQPPPPPQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFT
DSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKR
LKVQLKRPKDANRPY"
misc_feature 113..295
/gene="TNRC4"
/gene_synonym="BRUNOL1"
/gene_synonym="CAGH4"
/gene_synonym="CELF3"
/gene_synonym="ERDA4"
/note="RRM; Region: RNA recognition motif"
/db_xref="CDD:smart00360"
misc_feature 968..1189
/gene="TNRC4"
/gene_synonym="BRUNOL1"
/gene_synonym="CAGH4"
/gene_synonym="CELF3"
/gene_synonym="ERDA4"
/note="RRM; Region: RNA recognition motif"
/db_xref="CDD:smart00360"
BASE COUNT 467 a 763 c 605 g 459 t
ORIGIN
1 ccgggattca gccctgaagg cccagagcgc cctgcacgaa cagaagacgc ttccagggat
61 gaacaggccg atccaggtca agccagccga cagcgagagc cgaggagacc ggaagctctt
121 tgtggggatg ctagggaagc agcagacaga tgaggacgtc cggaagatgt ttgagccctt
181 cgggaccatc gacgagtgca ctgtgctccg ggggccagat ggcaccagca aaggctgcgc
241 cttcgtgaag ttccagaccc acgctgaggc ccaggcggcc atcaacaccc ttcacagcag
301 ccggaccctg ccaggtgcct cgtccagcct ggtggtgaag tttgctgaca ctgagaagga
361 gcgaggtctc cgccgcatgc agcaggtggc cacccagttg ggcatgttca gccccatcgc
421 cctccagttt ggagcctaca gcgcctacac ccaggccctg atgcagcagc aggcggccct
481 ggtagcggct cacagtgcct acctcagccc catggccacc atggctgccg tgcagatgca
541 gcacatggct gccatcaatg ccaatggcct catcgccacc cccatcaccc catcctcagg
601 aaccagcacc cctcctgcca tcgctgccac gcctgtctct gccattccgg ctgccctggg
661 cgtcaacggc tacagcccgg tgcccaccca gcccactggg cagcctgccc ctgatgctct
721 gtatcccaac ggggttcacc cctacccagc ccagagcccc gcggcccccg tggaccccct
781 gcagcaggcc tacgcgggga tgcagcacta cacagcagcc tacccagcag cctacagcct
841 ggttgcacct gcgttcccgc agcctccagc cctggtcgcc cagcagcccc caccaccacc
901 tcaacagcag cagcagcagc agcagcagca acagcagcag cagcaaagag aaggccctga
961 tggctgcaac atcttcatct accacctgcc ccaggagttc actgactcag agatcctcca
1021 gatgtttgtc ccctttggcc acgtcatctc agccaaagtc tttgttgacc gagccaccaa
1081 tcaaagcaaa tgttttggct ttgtgagttt cgacaatccg gccagtgccc aggctgccat
1141 ccaggccatg aatggcttcc agatcggcat gaagcgcctc aaagtccagc taaagcggcc
1201 taaggatgcc aaccggccct actgagggcc cccaggtctg gagatcccag aggaaggggc
1261 gcctcacacc ctcttcccac gactggcccc ggccctctcc gcacacctgc cctgggcctt
1321 gactgggttc tggggcaaac gctgcttcgt ggcccccggg ggcacaagac accggcccct
1381 cccacccccc tgcctctctg aagggccatg gctatgcttc cctggctcca agggcccatt
1441 tcctcctaga tgcccttttg gcctttgtga gggagcgagg aacaggctcg aaggctccgg
1501 ggtatctgcc ttctgctggg ctcctgtgac aggccttctg tgcccagcgt ttgtacttgc
1561 ctcccccaac agtgggcctg ttctacccgt gcaggcccca ggagagccgc aggggcctgc
1621 cacacactcc cagctcaccc tcaccccagc ctcttcccca cattaggggt ttcttggaag
1681 ctggctctca ctcccctcca ccctcagcta gaggtaggat atccctgatt cctgggctcc
1741 cagccctaaa actcactgcc tcccccaagg gccccctcta aggagggtgt gggggagccc
1801 tgagggctgc ctctctgcca gtcagccaca gagaccctcc tcctttcacg aggaaaagac
1861 cttcccctga acccctaaaa atgtttacag tctctgctgg ttccctctgt gtaaatacca
1921 ctaccacccg tgcgttatcc agcccgcccg gcctggcccg gacgctgcca tctctctttc
1981 tgggagttta gacaatgttg cccttggatt tttttctctc tcttaatttc tccctttgct
2041 ttggggggta attgggtatt gggaggaggg gtgtggggag gggtcaaggg gtttattacc
2101 tgatcatttt ctttaggaag aggttttagg gaaaagaaaa tggggtgggg gtgggggtgg
2161 taaggggaga ccggggagtc agtttcagac agttctctat gcttaactta tttatttatt
2221 gcattttact tttaaagagt tggtcttttc tgtctaaata aagaaaaaag tttaaaagca
2281 aaaaaaaaaa aaaa
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