LOCUS BC068005 3471 bp mRNA linear HUM 11-AUG-2006 DEFINITION Homo sapiens ligase III, DNA, ATP-dependent, mRNA (cDNA clone MGC:75006 IMAGE:6092747), complete cds. ACCESSION BC068005 VERSION BC068005.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3471) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3471) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (22-MAR-2004) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 140 Row: g Column: 14 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 7710127. FEATURES Location/Qualifiers source 1..3471 /db_xref="H-InvDB:HIT000262880" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:75006 IMAGE:6092747" /tissue_type="Pancreas, epithelioid carcinoma" /clone_lib="NIH_MGC_70" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..3471 /gene="LIG3" /db_xref="GeneID:3980" /db_xref="HGNC:HGNC:6600" /db_xref="MIM:600940" CDS 105..3134 /gene="LIG3" /codon_start=1 /product="ligase III, DNA, ATP-dependent" /protein_id="AAH68005.1" /db_xref="GeneID:3980" /db_xref="HGNC:HGNC:6600" /db_xref="MIM:600940" /translation="MSLAFKIFFPQTLRALSRKELCLFRKHHWRDVRQFSQWSETDLL HGHPLFLRRKPVLSFQGSHLRSRATYLVFLPGLHVGLCSGPCEMAEQRFCVDYAKRGT AGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMFEKLERARATTKKIEDL TELEGWEELEDNEKEQITQHIADLSSKAAGTPKKKAVVQAKLTTTGQVTSPVKGASFV TSTNPRKFSGFSAKPNNSGEAPSSPTPKRSLSSSKCDPRHKDCLLREFRKLCAMVADN PSYNTKTQIIQDFLRKGSAGDGFHGDVYLTVKLLLPGVIKTVYNLNDKQIVKLFSRIF NCNPDDMARDLEQGDVSETIRVFFEQSKSFPPAAKSLLTIQEVDEFLLRLSKLTKEDE QQQALQDIASRCTANDLKCIIRLIKHDLKMNSGAKHVLDALDPNAYEAFKASRNLQDV VERVLHNAQEVEKEPGQRRALSVQASLMTPVQPMLAEACKSVEYAMKKCPNGMFSEIK YDGERVQVHKNGDHFSYFSRSLKPVLPHKVAHFKDYIPQAFPGGHSMILDSEVLLIDN KTGKPLPFGTLGVHKKAAFQDANVCLFVFDCIYFNDVSLMDRPLCERRKFLHDNMVEI PNRIMFSEMKRVTKALDLADMITRVIQEGLEGLVLKDVKGTYEPGKRHWLKVKKDYLN EGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPGSQKWCTVTKCAGGHDDATLAR LQNELDMVKISKDPSKIPSWLKVNKIYYPDFIVPDPKKAAVWEITGAEFSKSEAHTAD GISIRFPRCTRIRDDKDWKSATNLPQLKELYQLSKEKADFTVVAGDEGSSTTGGSSEE NKGPSGSAVSRKAPSKPSASTKKAEGKLSNSNSKDGNMQTAKPSAMKVGEKLATKSSP VKVGEKRKAADETLCQTKVLLDIFTGVRLYLPPSTPDFSRLRRYFVAFDGDLVQEFDM TSATHVLGSRDKNPAAQQVSPEWIWACIRKRRLVAPC" BASE COUNT 932 a 858 c 921 g 760 t ORIGIN 1 cggatttaaa gagacaggcg ctccaaccgt cgtgggctgc ccgcagcctg taatgagcaa 61 gttccgaggc ctacggtgag cgccggagcc ggagaggcag ctatatgtct ttggctttca 121 agatcttctt tccacaaacc ctccgtgcac tcagccgaaa agaactgtgc ctattccgaa 181 aacatcactg gcgtgatgta agacaattca gccagtggtc agaaacagat ctgcttcatg 241 gacatcccct cttcctgaga agaaagcctg ttctatcatt ccagggaagc catctaagat 301 cacgtgccac ctaccttgtt ttcttgccag ggttgcatgt gggactctgc agtggcccct 361 gtgagatggc tgagcaacgg ttctgtgtgg actatgccaa gcgtggcaca gctggctgca 421 aaaaatgcaa ggaaaagatt gtgaagggcg tatgccgaat tggcaaagtg gtgcccaatc 481 ccttctcaga gtctgggggt gatatgaaag agtggtacca cattaaatgc atgtttgaga 541 aactagagcg ggcccgggcc accacaaaaa aaatcgagga cctcacagag ctggaaggct 601 gggaagagct ggaagataat gagaaggaac agataaccca gcacattgca gatctgtctt 661 ctaaggcagc aggtacacca aagaagaaag ctgttgtcca ggctaagttg acaaccactg 721 gccaggtgac ttctccagtg aaaggcgcct catttgtcac cagtaccaat ccccggaaat 781 tttctggctt ttcagccaag cccaacaact ctggggaagc cccctcgagc cccaccccta 841 agagaagtct gtcttcaagc aaatgtgacc ccaggcataa ggactgtctg ctacgggagt 901 ttcgaaagtt atgcgccatg gtggccgata atcctagcta caacacgaag acccagatca 961 tccaggactt ccttcggaaa ggctcagcag gagatggttt ccacggtgat gtgtacctaa 1021 cagtgaagct gctgctgcca ggagtcatta agactgttta caacttgaac gataagcaga 1081 ttgtgaagct tttcagtcgc atttttaact gcaacccaga tgatatggca cgggacctag 1141 agcagggtga cgtgtcagag acaatcagag tcttctttga gcagagcaag tctttccccc 1201 cagctgccaa gagcctcctt accatccagg aagtggatga gttccttctg cggctgtcca 1261 agctcaccaa ggaggatgag cagcaacagg ccctacagga cattgcctcc aggtgtacag 1321 ccaatgacct taaatgcatc atcaggttga tcaaacatga tctgaagatg aactcaggtg 1381 caaaacatgt gttagacgcc cttgacccca atgcctatga agccttcaaa gcctcgcgca 1441 acctgcagga tgtggtggag cgggtccttc acaacgcgca ggaggtggag aaggagccgg 1501 gccagagacg agctctgagc gtccaggcct cgctgatgac acctgtgcag cccatgttgg 1561 cggaggcctg caagtccgtt gagtatgcaa tgaagaaatg tcccaatggc atgttctctg 1621 agatcaagta cgatggagag cgagtccagg tgcataagaa tggagaccac ttcagctact 1681 tcagccgcag tctcaagccc gtccttcctc acaaggtggc ccactttaag gactacattc 1741 cccaggcttt tcctgggggc cacagcatga tcttggattc tgaagtgctt ctgattgaca 1801 acaagacagg caaaccactg ccctttggga ctctgggagt acacaagaaa gcagccttcc 1861 aggatgctaa tgtctgcctg tttgtttttg attgtatcta ctttaatgat gtcagcttga 1921 tggacagacc tctgtgtgag cggcggaagt ttcttcatga caacatggtt gaaattccaa 1981 accggatcat gttctcagaa atgaagcgag tcacaaaagc tttggacttg gctgacatga 2041 taacccgggt gatccaggag ggattggagg ggctggtgct gaaggatgtg aagggtacat 2101 atgagcctgg gaagcggcac tggctgaaag tgaagaaaga ctatttgaac gagggggcca 2161 tggccgacac agctgacctg gtggtccttg gagccttcta tgggcaaggg agcaaaggcg 2221 gcatgatgtc aatcttcctc atgggctgct acgaccctgg cagccagaag tggtgcacag 2281 tcaccaagtg tgcaggaggc catgatgatg ccacgcttgc ccgcctgcag aatgaactag 2341 acatggtgaa gatcagcaag gaccccagca aaatacccag ctggttgaag gtcaacaaga 2401 tctactatcc tgacttcatc gtcccagacc caaagaaagc tgccgtgtgg gagatcacag 2461 gggctgaatt ctccaaatcg gaggctcata cagctgacgg gatctccatc cgattccctc 2521 gctgcacccg aatccgagat gataaggact ggaaatctgc cactaacctt ccccaactca 2581 aggaactgta ccagttgtcc aaggagaagg cagacttcac tgtagtggct ggagatgagg 2641 ggagctccac tacagggggt agcagtgaag agaataaggg tccctcaggg tctgctgtgt 2701 cccgcaaggc ccccagcaag ccctcagcca gtaccaagaa agcagaaggg aagctgagta 2761 actccaacag caaagatggc aacatgcaga ctgcaaagcc ttccgctatg aaggtggggg 2821 agaagctggc cacaaagtct tctccagtga aagtagggga gaagcggaaa gctgctgatg 2881 agacgctgtg ccaaacaaag gtattgctgg acatcttcac tggggtgcgg ctttacttgc 2941 caccctccac accagacttc agccgtctca gacgctactt tgtggcattc gacggggacc 3001 tggtacagga atttgatatg acttcagcca cgcacgtgct gggtagcagg gacaagaacc 3061 ctgcggccca gcaggtctcc ccagagtgga tttgggcatg tatccggaaa cggagactgg 3121 tagctccctg ctaggtttgc tgtcttccct ctccctcagg ccatactctc ctttaccata 3181 ctattggact ggactcaggc tggaggcaga tagacacagt atagggggaa tgggcttgct 3241 tctcccaaac ccaccagttc tccactgtct cttctggacc aggaattagt tgctgtgggt 3301 gccacagctg aagtcagttt gtcttgctgg tttaaataga tctttcagag ctgggtgctg 3361 ggtttgccat ctttttgttt tctttgaaaa gcagcttagt tacccttttt ataaataaaa 3421 tatcttgcag ttaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa a //