LOCUS BC067878 2134 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 53, mRNA (cDNA
clone MGC:87571 IMAGE:5295819), complete cds.
ACCESSION BC067878
VERSION BC067878.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2134)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2134)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (19-MAR-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 168 Row: d Column: 22
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 55749864.
FEATURES Location/Qualifiers
source 1..2134
/db_xref="H-InvDB:HIT000262845"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:87571 IMAGE:5295819"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2134
/gene="DDX53"
/gene_synonym="CAGE"
/db_xref="GeneID:168400"
/db_xref="HGNC:HGNC:20083"
CDS 89..1984
/gene="DDX53"
/gene_synonym="CAGE"
/codon_start=1
/product="DEAD (Asp-Glu-Ala-Asp) box polypeptide 53"
/protein_id="AAH67878.1"
/db_xref="GeneID:168400"
/db_xref="HGNC:HGNC:20083"
/translation="MSHWAPEWKRAEANPRDLGASWDVRGSRGSGWSGPFGHQGPRAA
GSREPPLCFKIKNNMVGVVIGYSGSKIKDLQHSTNTKIQIINGESEAKVRIFGNREMK
AKAKAAIETLIRKQESYNSESSVDNAASQTPIGRNLGRNDIVGEAEPLSNWDRIRAAV
VECEKRKWADLPPVKKNFYIESKATSCMSEMQVINWRKENFNITCDDLKSGEKRLIPK
PTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSY
LMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRN
RNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRK
ILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVYVGNLNLVAVNTVKQNIIVTTE
KEKRALTQEFVENMSPNDKVIMFVSQKHIADDLSSDFNIQGISAESLHGNSEQSDQER
AVEDFKSGNIKILITTDIVSRGLDLNDVTHVYNYDFPRNIDVYVHRVGYIGRTGKTGT
SVTLITQRDSKMAGELIKILDRANQSVPEDLVVMAEQYKLNQQKRHRETRSREPGQRR
KEFYFLS"
BASE COUNT 761 a 396 c 480 g 497 t
ORIGIN
1 gcggaaggtg acgggaaaca ggccgcagac ctgaacttcc aaccgtatgt aggcgagaag
61 ccggtgccga tactcccact atcccacaat gtcccactgg gccccagagt ggaagagggc
121 ggaggctaat ccaagagacc ttggggccag ctgggatgtc aggggcagca gaggcagtgg
181 ctggagtggc cccttcggcc atcagggacc gagagcagca ggctcccgtg aaccaccact
241 ctgctttaaa ataaagaaca atatggttgg tgtggtcatt ggttacagtg gatcaaaaat
301 aaaagatcta caacattcga caaacactaa aatacagatc ataaacgggg aatctgaagc
361 aaaagtcaga atttttggca atagggaaat gaaagcaaag gccaaagcgg ctatagaaac
421 acttattaga aaacaagaaa gctacaactc agaatccagt gtggataatg ctgcatccca
481 aacccctatt ggaagaaatc taggcagaaa tgacattgtt ggagaagctg agccattgtc
541 aaattgggat cgcattaggg cagcagtcgt ggagtgcgaa aagagaaaat gggcagatct
601 accaccagtt aagaaaaact tttacataga atccaaagca acaagctgca tgtctgaaat
661 gcaggtgatt aactggagaa aggaaaattt caacataacg tgtgatgact tgaaaagtgg
721 tgaaaagcgt ctcattccaa aaccaacttg caggtttaaa gacgcttttc agcaataccc
781 tgatcttctg aaaagcataa taagggtagg gattttaaag ccaacgccaa ttcagtcaca
841 ggcatggcca attattctac aaggaataga tcttatagta gttgcacaaa ccggaacagg
901 gaaaacattg tcctatctaa tgcctgggtt tattcatctt gattctcaac caatatctag
961 agagcaaagg aatgggcctg ggatgctagt ccttacaccc actagagagt tggctcttca
1021 cgtggaagct gaatgttcaa agtattcata taaaggtctc aaaagcattt gcatatatgg
1081 tggtagaaac agaaatggac aaatagaaga cattagcaaa ggtgtagata tcattattgc
1141 aactcctggg aggctgaatg acctacaaat gaataactct gtcaacctaa gaagcataac
1201 ctacttggtt atagatgagg cagataaaat gctggatatg gaatttgaac cccagataag
1261 gaagatttta ttagatgtgc gcccagaccg acagactgtt atgacaagtg caacttggcc
1321 agatactgta cgtcaactag cactttctta tttgaaagat cctatgattg tttatgttgg
1381 taatctgaat ctagtggctg taaatacagt gaagcaaaat ataattgtta ccacagaaaa
1441 agaaaaacga gctctcaccc aagaattcgt agagaacatg tcacccaacg acaaagtcat
1501 catgtttgtc agccaaaaac atattgctga tgacttgtca agcgacttca atatccaagg
1561 catatctgca gaatcattac atggcaacag tgaacagagt gatcaagagc gagcagtaga
1621 ggactttaaa agcggaaaca taaagatact gattacaact gatatagtat cccgaggtct
1681 tgatcttaat gatgtcacac atgtatataa ttatgatttc ccaaggaata ttgacgtata
1741 tgtacacaga gtagggtaca ttggacggac aggaaagact ggcacatcag ttaccctcat
1801 cactcagaga gattcgaaaa tggccggtga attgattaaa attctggaca gagcaaatca
1861 gagtgttccg gaagatcttg tagtaatggc tgagcaatac aagttaaatc aacaaaagag
1921 gcacagagaa acacgatcaa gagaacctgg acaaagacgc aaggagtttt attttttaag
1981 ttgaaaagtt gtaccaggct actggaagat tccaggcatg ttaaagatat gcagtattga
2041 atatatgtaa ggaagtattg gaaacatact agccatttga agacataact aattcttaaa
2101 taatactgct aaactttcaa aaaaaaaaaa aaaa
//