LOCUS BC067808 1541 bp mRNA linear HUM 28-JUL-2005
DEFINITION Homo sapiens poliovirus receptor-related 3, mRNA (cDNA clone
MGC:87277 IMAGE:5285526), complete cds.
ACCESSION BC067808
VERSION BC067808.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1541)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1541)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (19-MAR-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 168 Row: b Column: 24
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 11386198.
FEATURES Location/Qualifiers
source 1..1541
/db_xref="H-InvDB:HIT000262776"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:87277 IMAGE:5285526"
/tissue_type="Brain, hypothalamus"
/clone_lib="NIH_MGC_96"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..1541
/gene="PVRL3"
/gene_synonym="DKFZP566B0846"
/gene_synonym="nectin-3"
/gene_synonym="PPR3"
/gene_synonym="PRR3"
/gene_synonym="PVRR3"
/db_xref="GeneID:25945"
/db_xref="MIM:607147"
CDS 143..1243
/gene="PVRL3"
/gene_synonym="DKFZP566B0846"
/gene_synonym="nectin-3"
/gene_synonym="PPR3"
/gene_synonym="PRR3"
/gene_synonym="PVRR3"
/codon_start=1
/product="PVRL3 protein"
/protein_id="AAH67808.1"
/db_xref="GeneID:25945"
/db_xref="MIM:607147"
/translation="MARTLRPSPLCPGGGKAQLSSASLLGAGLLLQPPTPPPLLLLLF
PLLLFSRLCGALAGPIIVEPHVTAVWGKNVSLKCLIEVNETITQISWEKIHGKSSQTV
AVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNIGFSDSGKYICKAVTFPLGNAQS
STTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTTT
SFPNETATIISQYKLFPTRFARGRRITCVVKHQALEKDIRYSFILDIQYAPEVSVTGY
DGNWFVGRKGVNLKCNADANPPPFKSVWSRLDGQWPDGLLASDNTLHFVHPLTFNYSG
VYICKVTNSLGQRSDQKVIYISAYNSVASLNC"
BASE COUNT 428 a 352 c 368 g 393 t
ORIGIN
1 gttagccggc agcgacggcg ctagagctgg gagctgggga cgcgcgcgcc ggaccttcca
61 cagcctccgc ccagagcctg aggcgccggg gccgggggag ccggggggcg ggcgggcgag
121 cgggccgggg ggagggtggg ggatggcgcg gaccctgcgg ccgtccccgc tgtgtcctgg
181 aggcggcaaa gcacaacttt cctccgcttc tctcctcgga gccgggctcc tgctgcagcc
241 cccgacgcca cctccgctgc tgctgctgct cttcccgctg ctgctcttct ccaggctctg
301 tggtgcctta gctggaccaa ttattgtgga gccacatgtc acagcagtat ggggaaagaa
361 tgtttcatta aagtgtttaa ttgaagtaaa tgaaaccata acacagattt catgggagaa
421 gatacatggc aaaagttcac agactgttgc agttcaccat ccccaatatg gattctctgt
481 tcaaggagaa tatcagggaa gagtcttgtt taaaaattac tcacttaatg atgcaacaat
541 tactctgcat aacataggat tctctgattc tggaaaatac atctgcaaag ctgttacatt
601 cccgcttgga aatgcccagt cctctacaac tgtaactgtg ttagttgaac ccactgtgag
661 cctgataaaa gggccagatt ctttaattga tggaggaaat gaaacagtag cagccatttg
721 catcgcagcc actggaaaac ccgttgcaca tattgactgg gaaggtgatc ttggtgaaat
781 ggaatccact acaacttctt ttccaaatga aacggcaacg attatcagcc agtacaagct
841 atttccaacc agatttgcta gaggaaggcg aattacttgt gttgtaaaac atcaagcctt
901 ggaaaaggac atccgatact ctttcatatt agacatacag tatgctcctg aagtttcggt
961 aacaggatat gatggaaatt ggtttgtagg aagaaaaggt gttaatctca aatgtaatgc
1021 tgatgcaaat ccaccaccct tcaaatctgt gtggagcagg ttggatggac aatggcctga
1081 tggtttattg gcttcagaca atactcttca ttttgtccat ccattgactt tcaattattc
1141 tggtgtttat atctgtaaag tgaccaattc ccttggtcaa agaagtgacc aaaaagtcat
1201 ctacatttca gcctacaatt cagtggcatc cctcaactgc tgacatcgag gatctagcaa
1261 cagaacctaa aaaattgccc ttcccattgt caactttggc aacaattaag gatgacacaa
1321 ttgccacgat cattgctagt gtagtgggtg gggctctctt catagtactt gtaagtgttt
1381 tggctggaat attctgctat aggagaagac ggacgtttcg tggagactac tttgccaaga
1441 actacattcc accatcagat atgcaaaaag aatcacaaat agatgttctt caacaagatg
1501 agcttgattc ttacccagac agtataaaaa aaaaaaaaaa a
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