LOCUS BC067784 1726 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens leucine rich repeat containing 3B, mRNA (cDNA clone
MGC:87183 IMAGE:5265009), complete cds.
ACCESSION BC067784
VERSION BC067784.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1726)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1726)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (19-MAR-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 167 Row: l Column: 22
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 16945968.
FEATURES Location/Qualifiers
source 1..1726
/db_xref="H-InvDB:HIT000262752"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:87183 IMAGE:5265009"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..1726
/gene="LRRC3B"
/gene_synonym="LRP15"
/db_xref="GeneID:116135"
/db_xref="HGNC:HGNC:28105"
CDS 593..1372
/gene="LRRC3B"
/gene_synonym="LRP15"
/codon_start=1
/product="leucine rich repeat containing 3B"
/protein_id="AAH67784.1"
/db_xref="GeneID:116135"
/db_xref="HGNC:HGNC:28105"
/translation="MNLVDLWLTRSLSMCLLLQSFVLMILCFHSASMCPKGCLCSSSG
GLNVTCSNANLKEIPRDLPPETVLLYLDSNQITSIPNEIFKDLHQLRVLNLSKNGIEF
IDEHAFKGVAETLQTLDLSDNRIQSVHKNAFNNLKARARIANNPWHCDCTLQQVLRSM
ASNHETAHNVICKTSVLDEHAGRPFLNAANDADLCNLPKKTTDYAMLVTMFGWFTMVI
SYVVYYVRQNQEDARRHLEYLKSLPSRQKKADEPDDISTVV"
BASE COUNT 466 a 449 c 397 g 414 t
ORIGIN
1 attgactgag ccgactgcat ctctgggcaa gcggcgcttt gcctctctcc tgtctttgtc
61 tgctcttcct gcaaggctac ggcgcctgga gcagggtctg cagcggccgc cgcagcaacg
121 cgagccaagt cgtgccccgc acggccgccc ggggccgcac cctcgctcgg tggcggcgcc
181 cgaagacgcc agccgcgcca cgcactgcct gcgtcccgcg ccccagccgc cgcgcaccaa
241 cgccgccgcc ttcgccggga gccaagcccg ccgggccggc ccggtcccag gtgggcagct
301 cggcttgcag ctggttggag gtggcggccg ctgcagccct ggcagcgggc acacccctaa
361 gcatacgcac ccaacgcctc ctacctgagc cacgaggatg gagcagccac cccggcccgg
421 gactggcgca aggtgcccaa gcaaggaaag aaataatgaa gagacacatg tgttagctgc
481 agccttttga aacacgcaag aaggaaatca atagtgtgga cagggctgga acctttacca
541 cgcttgttgg agtagatgag gaatgggctc gtgattatgc tgacattcca gcatgaatct
601 ggtagacctg tggttaaccc gttccctctc catgtgtctc ctcctacaaa gttttgttct
661 tatgatactg tgctttcatt ctgccagtat gtgtcccaag ggctgtcttt gttcttcctc
721 tgggggttta aatgtcacct gtagcaatgc aaatctcaag gaaataccta gagatcttcc
781 tcctgaaaca gtcttactgt atctggactc caatcagatc acatctattc ccaatgaaat
841 ttttaaggac ctccatcaac tgagagttct caacctgtcc aaaaatggca ttgagtttat
901 cgatgagcat gccttcaaag gagtagctga aaccttgcag actctggact tgtccgacaa
961 tcggattcaa agtgtgcaca aaaatgcctt caataacctg aaggccaggg ccagaattgc
1021 caacaacccc tggcactgcg actgtactct acagcaagtt ctgaggagca tggcgtccaa
1081 tcatgagaca gcccacaacg tgatctgtaa aacgtccgtg ttggatgaac atgctggcag
1141 accattcctc aatgctgcca acgacgctga cctttgtaac ctccctaaaa aaactaccga
1201 ttatgccatg ctggtcacca tgtttggctg gttcactatg gtgatctcat atgtggtata
1261 ttatgtgagg caaaatcagg aggatgcccg gagacacctc gaatacttga aatccctgcc
1321 aagcaggcag aagaaagcag atgaacctga tgatattagc actgtggtat agtgtccaaa
1381 ctgactgtca ttgagaaaga aagaaagtag tttgcgattg cagtagaaat aagtggttta
1441 cttctcccat ccattgtaaa catttgaaac tttgtatttc agtttctttt gaattatgcc
1501 actgctgaac ttttaacaaa cactacaaca taaataattt gagtttaggt gatccacccc
1561 ttaattgtac ccccgatggt atatttctga gtaagctact atctgaacat tagttagatc
1621 catctcacta tttaataatg aaatttattt ttttaattta aaagcaaata aaagcttaac
1681 tttgaaccat gaaaaaaaaa aaaaaaaaaa gaaaaaaaaa aaaaaa
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