LOCUS BC067732 1224 bp mRNA linear HUM 16-DEC-2006
DEFINITION Homo sapiens high-mobility group box 1, mRNA (cDNA clone MGC:86953
IMAGE:4818524), complete cds.
ACCESSION BC067732
VERSION BC067732.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1224)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1224)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (19-MAR-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 167 Row: d Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 56806672.
FEATURES Location/Qualifiers
source 1..1224
/db_xref="H-InvDB:HIT000262700"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:86953 IMAGE:4818524"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_95"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..1224
/gene="HMGB1"
/gene_synonym="HMG3"
/gene_synonym="SBP-1"
/db_xref="GeneID:3146"
/db_xref="HGNC:HGNC:4983"
/db_xref="MIM:163905"
CDS 100..747
/gene="HMGB1"
/gene_synonym="HMG3"
/gene_synonym="SBP-1"
/codon_start=1
/product="high-mobility group box 1"
/protein_id="AAH67732.1"
/db_xref="GeneID:3146"
/db_xref="HGNC:HGNC:4983"
/db_xref="MIM:163905"
/translation="MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKK
CSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAF
FLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIA
AYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDEEDEEEEEDEEDEDEEEDDDDE"
BASE COUNT 420 a 200 c 297 g 307 t
ORIGIN
1 attgtagtac attgagctcc atagagacag cgccggggca agtgagagcc ggacgggcac
61 tgggcgactc tgtgcctcgc tgaggaaaaa taactaaaca tgggcaaagg agatcctaag
121 aagccgagag gcaaaatgtc atcatatgca ttttttgtgc aaacttgtcg ggaggagcat
181 aagaagaagc acccagatgc ttcagtcaac ttctcagagt tttctaagaa gtgctcagag
241 aggtggaaga ccatgtctgc taaagagaaa ggaaaatttg aagatatggc aaaagcggac
301 aaggcccgtt atgaaagaga aatgaaaacc tatatccctc ccaaagggga gacaaaaaag
361 aagttcaagg atcccaatgc acccaagagg cctccttcgg ccttcttcct cttctgctct
421 gagtatcgcc caaaaatcaa aggagaacat cctggcctgt ccattggtga tgttgcgaag
481 aaactgggag agatgtggaa taacactgct gcagatgaca agcagcctta tgaaaagaag
541 gctgcgaagc tgaaggaaaa atacgaaaag gatattgctg catatcgagc taaaggaaag
601 cctgatgcag caaaaaaggg agttgtcaag gctgaaaaaa gcaagaaaaa gaaggaagag
661 gaggaagatg aggaagatga agaggatgag gaggaggagg aagatgaaga agatgaagat
721 gaagaagaag atgatgatga tgaataagtt ggttctagcg cagttttttt tttcttgtct
781 ataaagcatt taacccccct gtacacaact cactcctttt aaagaaaaaa attgaaatgt
841 aaggctgtgt aagatttgtt tttaaactgt acagtgtcct tttttgtata gttaacacac
901 taccgaatgt gtctttagat agccctgtcc tggtggtatt ttcaatagcc actaaccttg
961 cctggtacag tatgggggtt gtaaattggc atggaaattt aaagcaggtt catgttggtg
1021 cacagcacaa attagttata tatggggatg gtagtttttt catcttcagt tgtctctgat
1081 gcagcttata cgaaataatt gttgttctgt taactgaata ccactctgta attgcaaaaa
1141 aaaaaaaaag ttgcagctgt tttgttgaca ttctgaatgc ttctaagtaa atacaatttt
1201 ttttattaga aaaaaaaaaa aaaa
//