LOCUS BC067273 2081 bp mRNA linear HUM 25-AUG-2005
DEFINITION Homo sapiens ubiquitin specific peptidase 39, mRNA (cDNA clone
MGC:75069 IMAGE:6503509), complete cds.
ACCESSION BC067273
VERSION BC067273.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2081)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2081)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (12-MAR-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 141 Row: j Column: 7
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 56550050.
FEATURES Location/Qualifiers
source 1..2081
/db_xref="H-InvDB:HIT000262518"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:75069 IMAGE:6503509"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_71"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2081
/gene="USP39"
/gene_synonym="CGI-21"
/gene_synonym="HSPC332"
/gene_synonym="SAD1"
/db_xref="GeneID:10713"
CDS 33..1730
/gene="USP39"
/gene_synonym="CGI-21"
/gene_synonym="HSPC332"
/gene_synonym="SAD1"
/codon_start=1
/product="USP39 protein"
/protein_id="AAH67273.1"
/db_xref="GeneID:10713"
/translation="MSGRSKRESRGSTRGKRESESRGSSGRVKRERDREREPEAASSR
GSPVRVKREFEPASAREAPASVVPFVRVKREREVDEDSEPEREVRAKNGRVDSEDRRS
RHCPYLDTINRSVLDFDFEKLCSISLSHINAYACLVCGKYFQGRGLKSHAYIHSVQFS
HHVFLNLHTLKFYCLPDNYEIIDSSLEDITYVLKPTFTKQQIANLDKQAKLSRAYDGT
TYLPGIVGLNNIKANDYANAVLQALSNVPPLRNYFLEEDNYKNIKRPPGDIMFLLVQR
FGELMRKLWNPRNFKAHVSPHEMLQAVVLCSKKTFQITKQGDGVDFLSWFLNALHSAL
GGTKKKKKTIVTDVFQGSMRIFTKKLPHPDLPAEEKEQLLHNDEYQETMVESTFMYLT
LDLPTAPLYKDEKEQLIIPQVPLFNILAKFNGITEKEYKTYKENFLKRFQLTKLPPYL
IFCIKRFTKNNFFVEKNPTIVNFPITNVDLREYLSEEVQAVHKNTTYDLIANIVHDGK
PSEGSYRIHVLHHGTGKWYELQDLQVTDILPQMITLSEAYIQIWKRRDNDETNQQGA"
BASE COUNT 555 a 498 c 521 g 507 t
ORIGIN
1 cggacgcgtg ggcgactcgg ccggtagtgg agatgtccgg ccggtctaag cgggagtctc
61 gcggttccac tcgcgggaag cgagagtctg agtcgcgggg cagctccggt cgcgtcaagc
121 gggagcgaga tcgggagcgg gagcctgagg cggcgagctc ccggggcagc cctgtgcgcg
181 tgaagcggga gttcgagccg gcgagcgcgc gcgaggcccc ggcttctgtt gtcccgtttg
241 tgcgggtgaa gcgggagcgc gaggtcgatg aggactcgga gcctgagcgg gaggtgcgag
301 caaagaatgg ccgagtggat tctgaggacc ggaggagccg ccactgcccg tacctggaca
361 ccattaacag gagtgtgctg gactttgact ttgagaaact gtgttctatc tccctctcac
421 acatcaatgc ttatgcctgt ctggtgtgtg gcaagtactt tcaaggccgg ggtttgaagt
481 ctcacgccta cattcacagt gtccagttta gccaccatgt tttcctcaac ctccacaccc
541 tcaagtttta ctgccttcca gacaactatg agatcatcga ttcctcattg gaggatatca
601 cgtatgtgtt gaagcccact ttcacaaagc agcaaattgc aaacttggac aagcaagcca
661 aattgtcccg ggcatatgat ggtaccactt acctgccggg tattgtggga ctgaataaca
721 taaaggccaa tgattatgcc aacgctgtcc ttcaggctct atctaatgtt cctcctctcc
781 ggaactactt tctggaagaa gacaattata agaacatcaa acgtcctcca ggggatatca
841 tgttcttgtt ggtccagcgt tttggagagc tgatgagaaa gctctggaac cctcgaaatt
901 tcaaggcaca tgtgtctccc catgagatgc ttcaggcagt tgtactttgc agtaagaaga
961 cttttcagat caccaaacaa ggagatggcg ttgactttct gtcttggttt ctgaatgctc
1021 tgcactcagc tctggggggc acaaagaaga aaaagaagac tattgtgact gatgttttcc
1081 aggggtccat gaggatcttc actaaaaagc ttccccatcc tgatctgcca gcagaagaaa
1141 aagagcagtt gctccataat gacgagtacc aggagacaat ggtggagtcc acttttatgt
1201 acctgacgct ggaccttcct actgcccccc tctacaagga cgagaaggag cagctcatca
1261 ttccccaagt gccactcttc aacatcctgg ctaagttcaa tggcatcact gagaaggaat
1321 ataagactta caaggagaac tttctgaagc gcttccagct taccaagttg cctccatatc
1381 taatcttttg tatcaagaga ttcactaaga acaacttctt tgttgagaag aatccaacta
1441 ttgtcaattt ccctattaca aatgtggatc tgagagaata cttgtctgaa gaagtacaag
1501 cagtacacaa gaataccacc tatgacctca ttgccaacat cgtgcatgac ggcaagccct
1561 ccgagggctc ctaccggatc cacgtgcttc atcatgggac aggcaaatgg tatgaattac
1621 aagacctcca ggtgactgac atccttcccc agatgatcac actgtcagag gcttacattc
1681 agatttggaa gaggcgagat aatgatgaaa ccaaccagca gggggcttga aggaggcgtc
1741 tagggctttg ctcccaaggg ctgtggctga tgatgattga tgctcctttc tcccatgcat
1801 tgagctccca tctagcttca gcagggcaga acccttctcc agatgtgtgt aacttatgtc
1861 ttgagtatct gggagtagtt gaagaacaga taattccttc caaacatcaa gccttgggat
1921 tcttggagca agcagaaagc cagtaacttc gctctgttag aggtggagga ttttcctatg
1981 gttcccccca tttcctgatt tgtattttta gatggattaa atagtctcct gtttttaaaa
2041 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa a
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