LOCUS BC067261 2127 bp mRNA linear HUM 25-AUG-2005
DEFINITION Homo sapiens ubiquitin specific peptidase 48, mRNA (cDNA clone
IMAGE:6514749), partial cds.
ACCESSION BC067261
VERSION BC067261.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2127)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2127)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (12-MAR-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 141 Row: k Column: 10
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 52630448.
FEATURES Location/Qualifiers
source 1..2127
/db_xref="H-InvDB:HIT000262506"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:6514749"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_71"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..>2127
/gene="USP48"
/gene_synonym="MGC14879"
/gene_synonym="RAP1GA1"
/db_xref="GeneID:84196"
CDS 207..>2127
/gene="USP48"
/gene_synonym="MGC14879"
/gene_synonym="RAP1GA1"
/codon_start=1
/product="USP48 protein"
/protein_id="AAH67261.1"
/db_xref="GeneID:84196"
/translation="MAPRLQLEKAAWRWAETVRPEEVSQEHIETAYRIWLEPCIRGVC
RRNCKGNPNCLVGIGEHIWLGEIDENSFHNIDDPNCERRKKNSFVGLTNLGATCYVNT
FLQVWFLNLELRQALYLCPSTCSDYMLGDGIQEEKDYEPQTICEHLQYLFALLQNSNR
RYIDPSGFVKALGLDTGQQQDAQEFSKLFMSLLEDTLSKQKNPDVRNIVQQQFCGEYA
YVTVCNQCGRESKLLSKFYELELNIQGHKQLTDCISEFLKEEKLEGDNRYFCENCQSK
QNATRKIRLLSLPCTLNLQLMRFVFDRQTGHKKKLNTYIGFSEILDMEPYVEHKGGSY
VYELSAVLIHRGVSAYSGHYIAHVKDPQSGEWYKFNDEDIEKMEGKKLQLGIEEDLAE
PSKSQTRKPKCGKGTHCSRNAYMLVYRLQTQEKPNTTVQVPAFLQELVDRDNSKFEEW
CIEMAEMRKQSVDKGKAKHEEVKELYQRLPAGAEPYEFVSLEWLQKWLDESTPTKPID
NHACLCSHDKLHPDKISIMKRISEYAADIFYSRYGGGPRLTVKALCKECVVERCRILR
LKNQLNEDYKTVNNLLKAAVKGSDGFWVGKSSLRSWRQLALEQLDEQDGDAEQSNGKM
NGSTLNKDESKEKKKK"
BASE COUNT 626 a 420 c 572 g 509 t
ORIGIN
1 cgcggcggcg ctttgcggcc ggtcgtgcgg gtcgggcgcg ggcgggcgcg gcggcagtgg
61 cgcgcacagg tgattgactg gccagctgcc tgaaggagcg ccaggtcctc cttgctggca
121 ggtggcgaag cccattgggg cggcggtgca gaccgcggcg gcggctgcgg cggtctggct
181 cgggaggcgt tcctggggcc aaggccatgg ccccgcggct gcagctggag aaggcggcct
241 ggcgctgggc ggagacggtg cggcccgagg aggtgtcgca ggagcacatc gagaccgctt
301 accgcatctg gctggagccc tgcattcgcg gcgtgtgcag acgaaactgc aaaggaaatc
361 cgaattgctt ggttggtatt ggtgagcata tttggttagg agaaatagat gaaaatagtt
421 ttcataacat cgatgatccc aactgtgaga ggagaaaaaa gaactcattt gtgggcctga
481 ctaaccttgg agccacttgt tatgtcaaca catttcttca agtgtggttt ctcaacttgg
541 agcttcggca ggcactctac ttatgtccaa gcacttgtag tgactacatg ctgggagacg
601 gcatccaaga agaaaaagat tatgagcctc aaacaatttg tgagcatctc cagtacttgt
661 ttgccttgtt gcaaaacagt aataggcgat acattgatcc atcaggattt gttaaagcct
721 tgggcctgga cactggacaa cagcaggatg ctcaagaatt ttcaaagctc tttatgtctc
781 tattggaaga tactttgtct aaacaaaaga atccagatgt gcgcaatatt gttcaacagc
841 agttctgtgg agaatatgcc tatgtaactg tttgcaacca gtgtggcaga gagtctaagc
901 ttttgtcaaa attttatgag ctggagttaa atatccaagg ccacaaacag ttaacagatt
961 gtatctcgga atttttgaag gaagaaaaat tagaaggaga caatcgctat ttttgcgaga
1021 actgtcaaag caaacagaat gcaacaagaa agattcgact tcttagcctt ccttgcactc
1081 tgaacttgca gctaatgcgt tttgtctttg acaggcaaac tggacataag aaaaagctga
1141 atacctacat tggcttctca gaaattttgg atatggagcc ttatgtggaa cataaaggtg
1201 ggtcctacgt gtatgaactc agcgcagtcc tcatacacag aggagtgagt gcttattctg
1261 gccactacat cgcccacgtg aaagatccac agtctggtga atggtataag tttaatgatg
1321 aagacataga aaagatggag gggaagaaat tacaactagg gattgaggaa gatctagcag
1381 aaccttctaa gtctcagaca cgtaaaccca agtgtggcaa aggaactcat tgctctcgaa
1441 atgcatatat gttggtttat agactgcaaa ctcaagaaaa gcccaacact actgttcaag
1501 ttccagcctt tcttcaagag ctggtagatc gggataattc caaatttgag gagtggtgta
1561 ttgaaatggc tgagatgcgt aagcaaagtg tggataaagg aaaagcaaaa cacgaagagg
1621 ttaaggagct gtaccaaagg ttacctgctg gagctgagcc ctatgagttt gtctctctgg
1681 aatggctgca aaagtggttg gatgaatcaa cacctaccaa acctattgat aatcacgctt
1741 gcctgtgttc ccatgacaag cttcacccgg ataaaatatc aattatgaag aggatatctg
1801 aatatgcagc tgacattttc tatagtagat atggaggagg tccaagacta actgtgaaag
1861 ccctgtgtaa ggaatgtgta gtagaacgtt gtcgcatatt gcgtctgaag aaccaactaa
1921 atgaagatta taaaactgtt aataatctgc tgaaagcagc agtaaagggc agcgatggat
1981 tttgggtggg gaagtcctcc ttgcggagtt ggcgccagct agctcttgaa cagctggatg
2041 agcaagatgg tgatgcagaa caaagcaacg gaaagatgaa cggtagcacc ttaaataaag
2101 atgaatcaaa ggaaaaaaaa aaaaaaa
//