LOCUS BC067122 1525 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens sodium channel, voltage-gated, type I, beta, mRNA
(cDNA clone MGC:75137 IMAGE:5728955), complete cds.
ACCESSION BC067122
VERSION BC067122.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1525)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1525)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-MAR-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Invitrogen
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 139 Row: h Column: 14
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 47157334.
FEATURES Location/Qualifiers
source 1..1525
/db_xref="H-InvDB:HIT000262455"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:75137 IMAGE:5728955"
/tissue_type="Brain, hippocampus"
/clone_lib="NIH_MGC_124"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1525
/gene="SCN1B"
/gene_synonym="GEFSP1"
/db_xref="GeneID:6324"
/db_xref="HGNC:HGNC:10586"
/db_xref="MIM:600235"
CDS 134..790
/gene="SCN1B"
/gene_synonym="GEFSP1"
/codon_start=1
/product="sodium channel, voltage-gated, type I, beta"
/protein_id="AAH67122.1"
/db_xref="GeneID:6324"
/db_xref="HGNC:HGNC:10586"
/db_xref="MIM:600235"
/translation="MGRLLALVVGAALVSSACGGCVEVDSETEAVYGMTFKILCISCK
RRSETNAETFTEWTFRQKGTEEFVKILRYENEVLQLEEDERFEGRVVWNGSRGTKDLQ
DLSIFITNVTYNHSGDYECHVYRLLFFENYEHNTSVVKKIHIEVVDKANRDMASIVSE
IMMYVLIVVLTIWLVAEMIYCYKKIAAATETAAQENASEYLAITSESKENCTGVQVAE
"
BASE COUNT 340 a 477 c 435 g 273 t
ORIGIN
1 ccggtcccag agccgcagct gctgcgcccg cgcgctcccg gggacattct aaccgccgcc
61 aggtcccgcc gcctctcgcc ccgctattaa taccggcggc ccgggagggg ggcgcagcac
121 gcgccgcgca gccatgggga ggctgctggc cttagtggtc ggcgcggcac tggtgtcctc
181 agcctgcggg ggctgcgtgg aggtggactc ggagaccgag gccgtgtatg ggatgacctt
241 caaaattctt tgcatctcct gcaagcgccg cagcgagacc aacgctgaga ccttcaccga
301 gtggaccttc cgccagaagg gcactgagga gtttgtcaag atcctgcgct atgagaatga
361 ggtgttgcag ctggaggagg atgagcgctt cgagggccgc gtggtgtgga atggcagccg
421 gggcaccaaa gacctgcagg atctgtctat cttcatcacc aatgtcacct acaaccactc
481 gggcgactac gagtgccacg tctaccgcct gctcttcttc gaaaactacg agcacaacac
541 cagcgtcgtc aagaagatcc acattgaggt agtggacaaa gccaacagag acatggcatc
601 catcgtgtct gagatcatga tgtatgtgct cattgtggtg ttgaccatat ggctcgtggc
661 agagatgatt tactgctaca agaagatcgc tgccgccacg gagactgctg cacaggagaa
721 tgcctcggaa tacctggcca tcacctctga aagcaaagag aactgcacgg gcgtccaggt
781 ggccgaatag ccctggccct gggccccgcc tcaaggaaga gccagccgta atggggactc
841 tccaggcacc gcctgccccc agcgtggggg tggccactcc tgggccccag aaagcctcag
901 agtcctgccg acggagccac tggggtggga gggggcaggg ggcttggctc gcacccccac
961 tttcgcctcc tccagctcct gccccgccgg ccgcgcaccg ccatgcatga tgggtaaagc
1021 aatactgccg ctgcccccac cctgcttctg ctgcctgttt ggggaggggg gcggtgaggt
1081 gggggcagcg gccccgcacc cctcctcctt gctgatttgc acacattggc cgcttcagac
1141 acgcacttct ggggccagcc cctccccgcc tcctccctgc ctggcggcag gggtcgcgat
1201 gatgggctgg agcagtttgg ggcagggggt tctgggaccc actccgactc cccctccccg
1261 gcatcatttc ccctcccgct tcctccggct ggacctgggg tcccccctcc ctgtaatgca
1321 ctcctgcccc ggcccaacct cgccctctct caccagcctt gaactgtggc cacctagaaa
1381 ggggcccatt cagcctcgtc tctttacaga agtagttttg ttcatgaaat aaagactctt
1441 ggacttgaaa aaaaaaaaaa aaataaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1501 aaaaaaaaaa aaaaaaaaaa aaaaa
//