LOCUS BC067120 4490 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens protein tyrosine phosphatase domain containing 1, mRNA
(cDNA clone MGC:70358 IMAGE:5539182), complete cds.
ACCESSION BC067120
VERSION BC067120.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4490)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4490)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-MAR-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 139 Row: a Column: 16
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 30089949.
FEATURES Location/Qualifiers
source 1..4490
/db_xref="H-InvDB:HIT000262453"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:70358 IMAGE:5539182"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_72"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..4490
/gene="PTPDC1"
/gene_synonym="PTP9Q22"
/db_xref="GeneID:138639"
/db_xref="HGNC:HGNC:30184"
CDS 326..2590
/gene="PTPDC1"
/gene_synonym="PTP9Q22"
/codon_start=1
/product="protein tyrosine phosphatase domain containing
1"
/protein_id="AAH67120.1"
/db_xref="GeneID:138639"
/db_xref="HGNC:HGNC:30184"
/translation="MAAGVLPQNEQPYSTLVNNSECVANMKGNLERPTPKYTKVGERL
RHVIPGHMACSMACGGRACKYENPARWSEQEQAIKGVYSSWVTDNILAMARPSSELLE
KYHIIDQFLSHGIKTIINLQRPGEHASCGNPLEQESGFTYLPEAFMEAGIYFYNFGWK
DYGVASLTTILDMVKVMTFALQEGKVAIHCHAGLGRTGVLIACYLVFATRMTADQAII
FVRAKRPNSIQTRGQLLCVREFTQFLTPLRNIFSCCDPKAHAVTLPQYLIRQRHLLHG
YEARLLKHVPKIIHLVCKLLLDLAENRPVMMKDVSEGPGLSAEIEKTMSEMVTMQLDK
ELLRHDSDFSNPPNPTAVAADFDNRGMIFSNEQQFDPLWKRRNVECLQPLTHLKRRLS
YSDSDLKRAENLLEQGETPQTVPAQILVGHKPRQQKLISHCYIPQSPEPDLHKEALVR
STLSFWSQSKFGGLEGLKDNGSPIFHGRIIPKEAQQSGAFSADVSGSHSPGEPVSPSF
ANVHKDPNPAHQQVSHCQCKTHGVGSPGSVRQNSRTPRSPLDCGSSPKAQFLVEHETQ
DSKDLSEAASHSALQSELSAEARRILAAKALANLNESVEKEELKRKVEMWQKELNSRD
GAWERICGERDPFILCSLMWSWVEQLKEPVITKEDVDMLVDRRADAAEALFLLEKGQH
QTILCVLHCIVNLQTIPVDVEEAFLAHAIKAFTKVNFDSENGPTVYNTLKKIFKHTLE
EKRKMTKDGPKPGL"
BASE COUNT 1256 a 986 c 1049 g 1199 t
ORIGIN
1 gggcagcgcc ggggacgcgg cctcagcagg ggcgccccgc cacggggagc agcccaggcg
61 ctcgccccag gacgttgtcc ggcgggctgg gctgggaccc ctctgcctcc agggcgcgtc
121 gggagcagca gggatcggtg ccgcgccgtg agggtgcgca gaggctgccc tcgggcccgc
181 tacccacaga ccctccgcgg ggcagcgtct ccgggccggc cgcgccctgg tccgccgacc
241 gcagacgact tgtgacacgg acggcgcgtc ctgctgaccc cagccggcgc cgagggcttg
301 gaatctcgag cgggaaaaga ctaccatggc tgcaggagtc ttgcctcaga atgaacaacc
361 atattctacc ttggtgaata acagcgagtg tgttgcaaac atgaaaggaa atttagaacg
421 tccaacacca aagtacacaa aagtagggga gcgtttacgg catgtcattc ctggacacat
481 ggcatgttcc atggcgtgtg gcggtagagc ttgcaagtat gagaacccag cccgctggag
541 tgagcaggag caagccatta agggggttta ctcatcctgg gtcactgata atatactggc
601 catggcccgc ccatcctctg agctcctgga gaagtaccac atcattgatc agttcctcag
661 ccatggcata aaaacaataa tcaacctcca gcgccctggt gagcatgcta gctgtgggaa
721 ccctctggaa caagaaagtg gcttcacata ccttcctgag gctttcatgg aggctggcat
781 ttacttctac aatttcggat ggaaggatta tggtgtagcg tctcttacta ctatcctaga
841 tatggtgaag gtgatgacat ttgccttaca ggaaggaaaa gtagctatcc attgtcatgc
901 agggcttggt cgaacaggtg ttttaatagc ctgttactta gtttttgcaa cgagaatgac
961 tgctgaccaa gcaattatat ttgtgcgggc aaagcgaccc aattccatac aaaccagagg
1021 acagctcctc tgtgtaaggg aatttactca gtttctaact cctctccgca atatattctc
1081 ttgctgtgat cccaaagcac atgctgtcac cttacctcaa tatctaattc gccagcgtca
1141 tctgcttcat ggttatgagg cacgacttct gaaacacgtg ccaaaaatta tccacctagt
1201 ttgcaaattg ctgctggact tagcggagaa caggccagtg atgatgaagg atgtgtccga
1261 aggacctggt ctctctgctg aaatagaaaa gacaatgtct gagatggtca ccatgcagct
1321 ggataaagag ttactgaggc atgacagtga tttttccaac ccgcctaacc ccactgcagt
1381 ggcagcagat tttgacaatc gaggcatgat tttctccaat gagcaacagt ttgaccctct
1441 ttggaaaagg cggaatgttg agtgccttca acccctgact catctgaaaa ggcggctcag
1501 ctacagtgac tcagatttaa agagggccga gaacctcctg gagcaagggg agactccaca
1561 gacagtgcct gcccagatct tggttggcca caagcccagg cagcagaagc tcataagcca
1621 ttgttacatc ccacagtctc cagaaccaga cttacacaag gaagccttgg ttcgcagcac
1681 actttctttc tggagtcagt caaagtttgg aggcctggaa ggactcaaag ataatgggtc
1741 accaattttc catggaagga tcattccaaa ggaagcacag cagagtggag ctttctctgc
1801 agatgtttca ggctcacaca gccctgggga gccagtttca cccagctttg caaatgtcca
1861 taaggatcca aaccctgctc accagcaagt gtctcactgt cagtgtaaaa ctcatggtgt
1921 tgggagccct ggctctgtca ggcagaacag caggacaccc cgaagccctc tggactgtgg
1981 ctccagtccc aaagcacagt tcttggttga acatgaaacc caggacagta aagatctgtc
2041 tgaagcagct tcacactctg cattacagtc tgaattgagt gctgaggcaa gaagaatact
2101 ggcggccaaa gccctagcaa atttaaatga atctgtagaa aaggaggaac taaaaaggaa
2161 ggtagaaatg tggcagaaag agcttaattc ccgagatgga gcttgggaaa gaatatgtgg
2221 cgagagggac cctttcatcc tatgcagctt gatgtggtct tgggtggagc aactgaagga
2281 gcctgtaatc accaaagagg atgtggacat gttggttgac aggcgagcag atgccgcaga
2341 agcacttttt ttattagaga agggacagca ccagactatt ctctgcgtgt tgcactgcat
2401 agtgaacctg cagacaattc ccgtggatgt ggaggaagct ttccttgccc atgccattaa
2461 ggcattcact aaggttaatt ttgattctga aaatggacca acagtttaca acaccctgaa
2521 gaaaatattt aagcacacgc tggaagaaaa aagaaaaatg acaaaagatg gccctaagcc
2581 tggcctctag ctttcactcg tggtgaatat ttcagaccta aagatccaga tagtatctct
2641 gttcatatgt gaataagttg aagattgtgg ggctactttt tctcatagca ctttattttg
2701 aatgttgtta gtttgtgctg agaatggtcg tccgtatttg aaccaattat ttattttaaa
2761 atatatttaa gctacatttt tgttttgaaa aattgccata aatttggtgc cactttcttt
2821 tatttatttg actgagttaa tattattgta ttaacatttt aagtatatgg tgtttacatt
2881 cttatttctt ttgacatttt ggaaataatc ataacttgtc tttccaaaat aaccattttc
2941 ttgatggaac tcttcctaga gtttttacca aatagctaac tttagtagta aaacctcatt
3001 gtgtatccat tcccccacag atgaactaag aaagtcacca agtgtcttaa gctgttttat
3061 atttgttacg aagaaggcta ttgctacaat atttttaaag gtttcttttt taactttgaa
3121 attttttgtt tttccttttc tttttataaa tgtaacagag ggtttcaaag catattattt
3181 ttcagagaga tttagtttta ctttaatgga gtgactgtga agtggttggg attttttgct
3241 tgtagaaagt agacttgctc tttgtcagat ttccaaacaa ccttgccagc cttggctgtc
3301 aaaaggaggc aggagcagtt ctcaacacac caagccttat tcccactccc ttgggttgct
3361 gctgagccaa atagcatctt tacagaggaa gtgggatcag aggcaggaag tgtggaaagt
3421 tgctaagaag cagggcttgc ctctgtcctc ccggggactc cacagggata ttcgtgcagg
3481 gcaggggctc tgtgccagcc ctgctctctc agatgccaca gccactctgc agaggtgact
3541 cttggagctg gaggaagtca aaactgggcc actgtttgta ctgatggtgt attagcatga
3601 gcagcgtggc cctggcccca cactcccaaa tctgccactc catagaccca cttgcctcaa
3661 ggctttatat ttggctgctt tcttacaatg agaattaaga tttttaaact gaagttgacc
3721 atacaggttg cattagccct aactggcttc atgtaagaag ggtgactgcc taaactagtt
3781 ccttgtaagc tgaaccatca attatcagtt gaagccatac ttttatttaa attaatatac
3841 gtagatacca gaggccaagc cacagagagg ataatagttc ttcccaataa aggtgatatt
3901 aatcagacta atttcgaact aaagaagtta ctgcttaaag acggaatttc aggggaagca
3961 agactcattt agaacaaatg aaatttctcc agtcctacat ttctgaattg acttctagca
4021 catcaaaaat atttcagtca ttatcagtct cattaactga aatgccaaat gctaaatgca
4081 gtgttctttc acactgtttt aattttcttg ggaaattgag tccagtggat gttaatggag
4141 tgggttgccc atccctgaaa tgtcttattt tcaagtgcct ggcctgggaa agaaggggaa
4201 gaaacaattg cattatatcc aaagatacac tataaaaata gagtttttac caaaaaaaga
4261 tgtttgttct catctcagta ggcctcattt gggcaagtga cccacaggtc ttttggcgag
4321 tttgctattt gcctgttgaa atacttgttt caacttagag aacagttatg atgtgaccat
4381 agcatggcac aactaaaaat ctaagcctga aacctgaaaa aagagatatg acaagggaaa
4441 ttaatcaggc tatacataag tattgtattt atttgaaaaa aaaaaaaaaa
//