LOCUS BC067113 2380 bp mRNA linear HUM 19-MAR-2009
DEFINITION Homo sapiens cold shock domain containing C2, RNA binding, mRNA
(cDNA clone MGC:70438 IMAGE:5759182), complete cds.
ACCESSION BC067113
VERSION BC067113.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2380)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2380)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (08-MAR-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 139 Row: o Column: 1
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 46048172
The stop codon of the CDS annotated on this record is located > 55
bases upstream of a splice junction, and therefore the mRNA is
predicted to be subject to nonsense-mediated mRNA decay (NMD).
FEATURES Location/Qualifiers
source 1..2380
/db_xref="H-InvDB:HIT000262447"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:70438 IMAGE:5759182"
/tissue_type="Colon, Kidney, Stomach, adult, whole pooled"
/clone_lib="NIH_MGC_116"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2380
/gene="CSDC2"
/gene_synonym="dJ347H13.2"
/gene_synonym="PIPPIN"
/db_xref="GeneID:27254"
/db_xref="HGNC:HGNC:30359"
CDS 244..705
/gene="CSDC2"
/gene_synonym="dJ347H13.2"
/gene_synonym="PIPPIN"
/codon_start=1
/product="CSDC2 protein"
/protein_id="AAH67113.1"
/db_xref="GeneID:27254"
/db_xref="HGNC:HGNC:30359"
/translation="MTSESTSPPVVPPLHSPKSPVWPTFPFHREGSRVWERGGVPPRD
LPSPLPTKRTRTYSATARASAGPVFKGVCKQFSRSQGHGFITPENGSEDIFVHVSDIE
GEYVPVEGDEVTYKMCPIPPKNQKFQAVEVVLTQLAPHTPHETWSGQVVGS"
BASE COUNT 475 a 804 c 692 g 409 t
ORIGIN
1 cacacacaca cacacacaat cttccagacc catcccctgc ctgccagctc cacgagccag
61 agagagacag agcgcggacg ccgcaggagg cagtgcctgg accccagctg cccaggagag
121 acggagcccg tggctggtga ggccgcagag cagggccagg ccgggccctg cccgcaagga
181 cgaccaaacc cctcaccggc ccctgggccc cagagcccac caggctctcc tgctggcccc
241 accatgactt cagagtcgac gtcaccccca gttgtgcccc cgctccactc ccccaagtcc
301 ccagtctggc ccaccttccc cttccacagg gagggcagca gggtctggga gcggggtggt
361 gtcccacctc gggacctacc cagccctctg cccaccaagc ggaccaggac ctattcagcg
421 acagcccggg cctcagctgg ccccgtgttc aagggcgtct gtaagcagtt ctcacgctca
481 cagggccatg gcttcatcac ccccgagaac gggtccgagg acatcttcgt acatgtgtct
541 gacatcgagg gggagtacgt gccagtggag ggcgacgagg tgacctacaa gatgtgccct
601 atccctccca agaaccagaa gttccaggcc gtggaggtgg tgctcactca gctggccccc
661 cacactcccc acgagacgtg gtctggccag gtcgtgggct cctaggctga gtggttcaca
721 ggccagctgg ccgggggttg gggagccaca cagggtgaac gggcagcagc cggctccatg
781 ccccactgcc ctggctgatg agtccttcgg tggcctcagt gtgcacgtct gtctgtccgt
841 ctgtgcttgt ggctatgagc gtgtgcctcc acccacccca cgacccgtga ctactgtgca
901 agctggccag gaggtaggtg gagggcaagg ccaccagacc tggcttcgcg ctgtccactg
961 cctctctcct cccctccctg ccgcagacac gcaggacccg ctcgccctcc tgcttacccg
1021 tccccacggt gactgagctg cgagagcctg cgctgggctc actccctggc ctccgcccct
1081 gagctgtccc gtgtcagtcc ctggcccgga gccaggctct ctgtgctact tacatctccc
1141 tcccttggct gaggtccccc gccacagcct ggacccttcc ctcagaagcc tggccgatgg
1201 gtgcttttgg ggagcctctc agcctggcag tggcgctggg ctccttcccc tgggctgtac
1261 tgagccgagc ccaggggttt gcagagggtg ggggtccatc tctccagctt ggctgcagac
1321 ctcctttacc ctgactcaca agccccactg atgctctggg ccatgcccgg ctgacggctg
1381 ctgtggatgc cgcgagggac ggacacacgt ccggggcacc cacgaggagg gcccccagcc
1441 tgggagactg gccctgcggc ctccacgtca aactctcttc ccaaagccct aacagaccag
1501 tggccgaggt gtggctctta ttgcatccat ccctgaagat gtgtggctgt tgctgtcacc
1561 tggagtcctt ttggggccaa gatgtgtgtg cacccggggt cgtggccatt cactcccagg
1621 caggggtgag ggtggcctgg cccaggaggc caggaaggag ggccctgtct gcctccacct
1681 ctgggtgcac cccctgccta ccaccctccc ttctagagag cacatcgcct gaccggggag
1741 aagtggggcc gtggttcgag ggagggctgg ccaggggtgg gacccttatg agactcagtc
1801 tgtgagtaaa actgggggct caaatgccca ggatgagggg atcagtgact gtctaggagg
1861 atcccttgcc ttgtaggtgc cccaagaccg cagggtagaa atcagccggg atgcctgcat
1921 cccacccccg gccccagggc ccaccacata aaatctggga gcccagagct gctgaggtgt
1981 ggtcagctcc cctaaaatgg gcacggccca gcctgtccca tgaggaataa aggcccctgg
2041 cccccttgag agagggcttg ttggtgaggg ctgactcctg ggggccccca aggctcccct
2101 cctgtgggga ggccaccttt taaggcacca ctagcagtca ggatatggtg gcatcagccc
2161 tggggcctcc tgggtggcag gggggcagca gctctcctcc ccactcacag gccctgcagt
2221 gctcatttgg aattcctccc aagacccctg gccacccaga ccccccattc ttcctaacac
2281 tggcaataaa ccctcaactg tgaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2341 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
//