LOCUS BC067102 5013 bp mRNA linear HUM 30-MAR-2004
DEFINITION Homo sapiens PR domain containing 15, mRNA (cDNA clone MGC:71480
IMAGE:5925140), complete cds.
ACCESSION BC067102
VERSION BC067102.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 5013)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 5013)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (08-MAR-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Lou Staudt
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 50 Row: j Column: 5
This clone was selected for full length sequencing because it
passed the following selection criteria: Hexamer frequency ORF
analysis.
FEATURES Location/Qualifiers
source 1..5013
/db_xref="H-InvDB:HIT000262437"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:71480 IMAGE:5925140"
/tissue_type="Lymph, lymphoma"
/clone_lib="NIH_MGC_99"
/lab_host="DH10B"
/note="Vector: pOTB7"
gene 1..5013
/gene="PRDM15"
/gene_synonym="C21orf83"
/gene_synonym="PFM15"
/gene_synonym="ZNF298"
/db_xref="GeneID:63977"
CDS 78..3503
/gene="PRDM15"
/gene_synonym="C21orf83"
/gene_synonym="PFM15"
/gene_synonym="ZNF298"
/codon_start=1
/product="PRDM15 protein"
/protein_id="AAH67102.1"
/db_xref="GeneID:63977"
/translation="MAEDGSEEIMFIWCEDCSQYHDSECPELGPVVMVKDSFVLSRAR
SSLPPNLEIRRLEDGAEGVFAITQLVKRTQFGPFESRRVAKWEKESAFPLKVFQKDGH
PVCFDTSNEDDCNWMMLVRPAAEAEHQNLTAYQHGSDVYFTTSRDIPPGTELRVWYAA
FYAKKMDKPMLKQAGSGVHAAGTPENSAPVESEPSQWACKVCSATFLELQLLNEHLLG
HLEQAKSLPPGSQSEAAAPEKEQDTPRGEPPAVPESENVATKEQKKKPRRGRKPKVSK
AEQPLVIVEDKEPTEQVAEIITEVPPDEPVSATPDERIMELVLGKLATTTTDTSSVPK
FTHHQNNTITLKRSLILSSRHGIRRKVIKQLGEHKRVYQCNICSKIFQNSSNLSRHVR
SHGDKLFKCEECAKLFSRKESLKQHVSYKHSRNEVDGEYRYRCGTCEKTFRIESALEF
HNCRTDDKTFQCEMCFRFFSTNSNLSKHKKKHGDKKFACEVCSKMFYRKDVMLDHQRR
HLEGVRRVKREDLEAGGENLVRYKKEPSGCPVCGKVFSCRSNMNKHLLTHGDKKYTCE
ICGRKFFRVDVLRDHIHVHFKDIALMDDHQREEFIGKIGISSEENDDNSDESADSEPH
KYSCKRCQLTFGRGKEYLKHIMEVHKEKGYGCSICNRRFALKATYHAHMVIHRENLPD
PNVQKYIHPCEICGRIFNSIGNLERHKLIHTGVKSHACEQCGKSFARKDMLKEHMRVH
DNVREYLCAECGKGMKTKHALRHHMKLHKGIKEYECKECHRRFAQKVNMLKHCKRHTG
IKDFMCELCGKTFSERNTMETHKLIHTVGKQWTCSVCDKKYVTEYMLQKHVQLTHDKV
EAQSCQLCGTKVSTRASMSRHMRRKHPEVLAVRIDDLDHLPETTTIDASSIGIVQPEL
TLEQEDLAEGKHGKAAKRSHKRKQKPEEEAGAPVPEDATFSEYSEKETEFTGSVGDET
NSAVQSIQQVVVTLGDPNVTTPSSSVGLTNITVTPITTAAATQFTNLQPVAVGHLTTP
ERQLQLDNSILTVTFDTVSGSAMLHNRQNDVQIHPQPEASNPQSVAHFINLTTLVNSI
TPLGSQLSDQHPLTWRAVPQTDVLPPPQPQAPPQQAAQPQVQAEQQQQQMYSY"
misc_feature 222..572
/gene="PRDM15"
/gene_synonym="C21orf83"
/gene_synonym="PFM15"
/gene_synonym="ZNF298"
/note="SET; Region: SET (Su(var)3-9, Enhancer-of-zeste,
Trithorax) domain"
/db_xref="CDD:smart00317"
BASE COUNT 1273 a 1366 c 1403 g 971 t
ORIGIN
1 gttcccaagc agtgctggca ctgctggttc ctggtccagg gaccacattt tgaaatcact
61 aatgtaaggt gtcagagatg gctgaagatg ggagcgaaga gatcatgttc atctggtgtg
121 aagactgcag ccagtaccac gactccgaat gtcccgagct gggcccagtg gtcatggtca
181 aagactcctt tgtgttaagc agggcaaggt catcccttcc tcccaacttg gagatcagac
241 gactggaaga tggagccgag ggggtgttcg ccatcactca gctcgtcaag cggacacagt
301 tcggtccctt tgagtccagg agggtcgcca aatgggaaaa ggagtctgca tttcccctga
361 aggtgttcca gaaggacggg caccccgtgt gcttcgacac ctccaacgag gatgactgca
421 actggatgat gctggtgcgg ccagcggcgg aggccgagca ccagaacctg acggcctacc
481 agcacggcag cgacgtgtac ttcaccacct ccagagacat ccccccgggt accgagctgc
541 gcgtgtggta tgcggccttc tatgccaaga agatggacaa gcccatgctg aagcaggccg
601 gctctggcgt ccacgctgca ggcaccccag aaaacagcgc ccccgtggag tcggaaccca
661 gccagtgggc gtgtaaagtg tgttctgcca ccttcctgga gctgcagctc ctcaatgaac
721 atctgttggg ccacttagaa caagccaaaa gccttcctcc aggcagccaa agcgaggcag
781 cagctcccga gaaggagcag gacacacccc ggggggaacc ccctgcagtg cccgagagcg
841 agaatgttgc caccaaagaa cagaagaaaa agcctcgaag ggggagaaaa cccaaagtgt
901 ccaaagctga gcagcctcta gtcatcgtgg aagacaagga acccacagag caagtggcag
961 agatcattac cgaggtccct ccggatgagc ctgtgagtgc aacgccagat gagcggatca
1021 tggagctggt tctggggaag ctggccacca ccaccactga caccagctcg gttccaaagt
1081 tcacccatca tcagaataac accatcacgc tcaagaggag cttaattctc tcaagcagac
1141 acggcatccg gcgcaaggtc atcaaacagc tcggggagca caagcgggtt taccagtgca
1201 atatctgcag caagatcttc cagaacagca gcaacctgag caggcacgtg cgctcgcatg
1261 gtgacaagct gtttaagtgc gaagagtgtg caaaattgtt cagccgcaaa gagagcctaa
1321 agcagcacgt ttcctacaag cacagcagga acgaggtgga cggcgagtac aggtaccgct
1381 gcggcacttg tgagaagacc ttccgcatcg agagcgcgct ggagttccac aactgcagga
1441 cagatgacaa gacgttccaa tgtgagatgt gtttcagatt cttctccacc aacagcaacc
1501 tctccaagca caagaagaag cacggcgaca agaagtttgc ctgtgaggtc tgcagcaaga
1561 tgttctaccg caaggacgtc atgctggacc accagcgccg gcacctggaa ggagtgcggc
1621 gagtgaagcg agaggacctg gaggccggtg gggagaacct ggtccgttac aagaaggagc
1681 cttccgggtg cccggtgtgt ggcaaggtgt tctcctgccg gagcaatatg aacaagcacc
1741 tgctcaccca cggcgacaag aagtacacct gcgagatctg cgggcgcaag ttcttccgcg
1801 tggatgtgct cagggaccac atccatgtcc acttcaagga catcgcgttg atggatgacc
1861 accagaggga agagtttatc ggcaagatcg ggatctcctc ggaagaaaac gatgacaatt
1921 ctgacgagag cgcagactcg gagcctcaca agtacagctg caagcggtgc cagctcacct
1981 tcggccgggg gaaggagtac ctgaagcaca tcatggaggt gcacaaggag aagggctatg
2041 gctgcagcat ctgcaaccgg cgctttgcac tgaaggccac ctaccacgcc cacatggtca
2101 tccaccgtga aaacctgccg gaccccaacg tgcagaagta catccacccc tgcgagatct
2161 gcgggcggat cttcaacagc atcgggaacc tggagcgcca caagctcatc cacacaggtg
2221 tgaagagcca cgcctgcgag cagtgtggga agtcctttgc caggaaggac atgctgaagg
2281 agcacatgcg tgtgcacgac aacgtccgcg agtacctgtg tgccgagtgt gggaaaggca
2341 tgaagaccaa gcacgcgctg cgccaccaca tgaagctgca caagggcatc aaggagtacg
2401 agtgcaagga gtgccaccgc aggttcgcgc agaaggtcaa catgctcaag cactgcaagc
2461 ggcacacggg gattaaagat ttcatgtgtg aattgtgtgg gaagacattc agcgagagga
2521 acaccatgga gacccacaag ctcatccaca cagtgggcaa gcagtggacg tgctccgtgt
2581 gcgacaagaa gtacgtgacc gagtacatgc tgcagaagca cgttcagctc acacacgaca
2641 aggtggaggc gcagagctgc cagctgtgcg ggaccaaggt gtccaccagg gcctccatga
2701 gccgacacat gcggcgcaag caccccgagg tgctcgcggt gaggatcgat gacctggacc
2761 acctcccgga gaccaccacc atcgacgcct cctccattgg catcgtccag cctgagctga
2821 ctctggagca ggaggatttg gccgaaggga agcacgggaa agctgccaag cgaagtcaca
2881 agagaaagca gaagccagaa gaggaggcgg gtgctccggt gcccgaggac gccaccttca
2941 gcgaatactc agagaaagag acggagttca caggcagtgt aggcgacgag accaattccg
3001 cagtacagag cattcagcag gtagtggtga ccctgggtga cccaaatgtg accacaccat
3061 cgagctcagt cggcttgacc aacatcaccg tgacccccat caccactgcg gccgcgactc
3121 agtttaccaa tctccagccg gtggccgtgg ggcaccttac cacccctgaa cgccagttac
3181 agctggacaa ctcaatcctg accgtgacct ttgataccgt cagcggctct gccatgttgc
3241 acaaccgcca aaatgacgtc cagatccacc cccagccgga agcctcgaac ccacagtctg
3301 tggcccattt catcaacctg acgaccctgg tcaactccat cacgcccctg gggagccagc
3361 ttagtgacca gcacccgctc acgtggcggg cagtgcccca gactgacgtc ttgccacccc
3421 cgcagccgca ggcaccccca cagcaggcgg cccagcccca ggtgcaggcg gagcagcagc
3481 agcagcagat gtacagctac tgagctgcgt tccgggagac tcggggcaag aactgcagag
3541 ggatgtttgg gatttgttta gatgtgtttg ctggatacca aacaaacaaa aagtcataca
3601 ttgcaatgta aggttgactt agctttgcag agtatctcca gatcccccgc cagcaaccat
3661 tacggtctgt cagcttaact ctagaaggga cctctggcag gccagagttt taaactggat
3721 ggggctccac accatgcctt accaaggcag taagtcctgg gccggggccg catctgcctc
3781 cccttacaga accagtgttc gcccgacaca gggttcggga aagtgaagct gagagagaag
3841 caggatttta agaggcagga gataagttat taggaacaca aatggttcat tttctttttt
3901 cttttagagc tcggttccta tgagaacaca gacagtattc acaggtggca gcaggcagca
3961 gggaacattt tctcctcact tctggatttt tttgcaagcg agcacataga agttaaagta
4021 acgtgtattc tctttgaact aggagtggag tcggttctta tacaactatg ggctgaaacc
4081 atgaggcgtg ctgagccgca cctgatcctg caaccttcga ggtcatcacg gtcatcatgt
4141 gcaaggggtc acgtgaggtc actgactcca gctcaaaagg catcttagta atatccatga
4201 atcgatttcc aatagagttt ttttcctttt ttttttttaa ctttatttca aacatacatt
4261 atgtgttcaa gactgttatg gccaatattg tgttttagtt ttatgttaac atgataaagt
4321 catgtgcact gtaggaccat ctgtccctgt ccacccttca cagctgccca gatgcagagg
4381 gtcgcgcggc tgtgtgtgag gagtgagcct ccctgctgcc cccaggggct cctccgggtt
4441 gtctcaggat tctctgcaat ccaaatgtat ccattctggc tgaagcccag ccagaatccc
4501 gagtggaaga aacgggggaa aattcatatt ttccttctgt ttaaacttca attccaaagg
4561 tgcacagatg tattcataaa ggaagacatt agatccagcc attgtggcca ccaggctctg
4621 tggacccatc tcagtggaga attcgttttg gacccgtggc tccgtgcagc tgtggactcg
4681 agtgccatcc actggtgtga gtcttgcggg gaggccacag gaaaacgttc tgtgccaagt
4741 gccgcctcgc tgtgtccggc atgggactgc gctggagggt ccggcgtgga aggcagacct
4801 cctgtacctc tatcgttccc atttgtggca tccaaaggcg gaaggctcat ggcttcccca
4861 ctagaggcgg cgtcttgggc tttcccattg gattgtgaaa ggcattaaga ctgtttggag
4921 atgttggctg tatttcctgt cacatcaggt tgtatgatga cgaataaaag gtgctgtgac
4981 ccgtgttttc aaaaaaaaaa aaaaaaaaaa aaa
//