LOCUS BC066977 1497 bp mRNA linear HTC 09-JUN-2008
DEFINITION Homo sapiens shisa homolog 4 (Xenopus laevis), mRNA (cDNA clone
IMAGE:4794651), with apparent retained intron.
ACCESSION BC066977
VERSION BC066977.1
KEYWORDS HTC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1497)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1497)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-MAR-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 167 Row: c Column: 4
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 39930574
This clone has the following problem: retained intron.
FEATURES Location/Qualifiers
source 1..1497
/db_xref="H-InvDB:HIT000262397"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:4794651"
/tissue_type="Brain, hypothalamus"
/clone_lib="NIH_MGC_96"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
BASE COUNT 272 a 469 c 477 g 279 t
ORIGIN
1 tttggtcctg cggtcccttc tctgggaggc ccgaccccgg ccgcgcccag cccccaccat
61 gccacccgcg gggctccgcc gggccgcgcc gctcaccgca atcgctctgt tggtgctggg
121 ggctcccctg ggtaagggga tggggagaga tgcggcagga gtgggatggg ggcggaggaa
181 ggggagggac cgatccgagg ggcttgggct cggggcttct ccgagaccct ccggctgcca
241 cgggagcctt gggtgttgct gggtcctcaa gaagcgggaa gagggagctc caggatgctg
301 ggccatggga ggctgatccc ggggtgcagg gtcagcttca ggcagaggcc tcgggggctc
361 tggggctgag accctcaggg tggagacaag gggcaaccct cagtgttcgg gagccgtcag
421 gctggggacc gccaggggag tggggccgag cgcggctggg gatgaactgg cctggtggcc
481 actgggcacc cccaatccct gcccgcagtg ctggccggcg aggactgcct gtggtacctg
541 gaccggaatg gctcctggca tccggggttt aactgcgagt tcttcacctt ctgctgcggg
601 acctgctacc atcggtactg ctgcagggac ctgaccttgc ttatcaccga gaggcagcag
661 aagcactgcc tggccttcag ccacaagacc atagcaggca tcgcctcagc tgtgatcctc
721 tttgttgctg tggttgccac caccatctgc tgcttcctct gttcctgttg ctacctgtac
781 cgccggcgcc agcagctcca gagcccattt gaaggccagg agattccaat gacaggcatc
841 ccagtgcagc cagtataccc atacccccag gaccccaaag ctggccctgc acccccacag
901 cctggcttca tatacccacc tagtggtcct gctccccaat atccactcta cccagctggg
961 cccccagtct acaaccctgc agctcctcct ccctatatgc caccacagcc ctcttacccg
1021 ggagcctgag gaaccagcca tgtctctgct gccccttcag tgatgccaac cttgggagat
1081 gccctcatcc tgtacctgca tctggtcctg ggggtggcag gagtcctcca gccaccaggc
1141 cccagaccaa gccaagccct gggccctact ggggacagag ccccagggaa gtggaacagg
1201 agctgaacta gaactatgag gggttggggg gagggcttgg aattatgggc tatttttact
1261 gggggcaagg gagggagatg acagcctggg tcacagtgcc tgttttcaaa tagtccctct
1321 gctcccaaga tcccagccag gaaggctggg gccctactgt ttgtcccctc tgggctgggg
1381 tggggggagg gaggaggttc cgtcagcagc tggcagtagc cctcctctct ggctgcccca
1441 ctggccacat ctctggcctg ctagattaaa gctgtaaaga caaaaaaaaa aaaaaaa
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