LOCUS BC066938 2174 bp mRNA linear HUM 17-JUL-2006
DEFINITION Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 43, mRNA (cDNA
clone MGC:87287 IMAGE:4829072), complete cds.
ACCESSION BC066938
VERSION BC066938.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2174)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2174)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (01-MAR-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Miklos Palkovits, M.D., Ph.D.
cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki
Toshiyuki and Piero Carninci (RIKEN)
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 167 Row: h Column: 17
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 10346128.
FEATURES Location/Qualifiers
source 1..2174
/db_xref="H-InvDB:HIT000262359"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:87287 IMAGE:4829072"
/tissue_type="Testis"
/clone_lib="NIH_MGC_97"
/lab_host="DH10B"
/note="Vector: pBluescriptR"
gene 1..2174
/gene="DDX43"
/gene_synonym="DKFZp434H2114"
/gene_synonym="HAGE"
/db_xref="GeneID:55510"
/db_xref="HGNC:HGNC:18677"
/db_xref="MIM:606286"
CDS 26..1972
/gene="DDX43"
/gene_synonym="DKFZp434H2114"
/gene_synonym="HAGE"
/codon_start=1
/product="DEAD (Asp-Glu-Ala-Asp) box polypeptide 43"
/protein_id="AAH66938.1"
/db_xref="GeneID:55510"
/db_xref="HGNC:HGNC:18677"
/db_xref="MIM:606286"
/translation="MSHHGGAPKASTWVVASRRSSTVSRAPERRPAEELNRTGPEGYS
VGRGGRWRGTSRPPEDVAAGHEELPLCFALKSHFVGAVIGRGGSKIKNIQSTTNTTIQ
IIQEQPESLVKIFGSKAMQTKAKAVIDNFVKKLEENYNSECGIDTAFQPSVGKDGSTD
NNVVAGDRPLIDWDQIREEGLKWQKTKWADLPPIKKNFYKESTATSAMSKVEADSWRK
ENFNITWDDLKDGEKRPIPNPTCTFDDAFQCYPEVMENIKKAGFQKPTPIQSQAWPIV
LQGIDLIGVAQTGTGKTLCYLMPGFIHLVLQPSLKGQRNRPGMLVLTPTRELALQVEG
ECCKYSYKGLRSVCVYGGGNRDEQIEELKKGVDIIIATPGRLNDLQMSNFVNLKNITY
LVLDEADKMLDMGFEPQIMKILLDVRPDRQTVMTSATWPHSVHRLAQSYLKEPMIVYV
GTLDLVAVSSVKQNIIVTTEEEKWSHMQTFLQSMSSTDKVIVFVSRKAVADHLSSDLI
LGNISVESLHGDREQRDREKALENFKTGKVRILIATDLASRGLDVHDVTHVYNFDFPR
NIEEYVHRIGRTGRAGRTGVSITTLTRNDWRVASELINILERANQSIPEELVSMAERF
KAHQQKREMERKMERPQGRPKKFH"
BASE COUNT 736 a 373 c 522 g 543 t
ORIGIN
1 ggcggacgcg ccccttcttg gaacaatgtc ccaccacgga ggagctccca aggcctctac
61 gtgggtcgtt gctagtcggc gaagctcgac agtgtcccga gcgccagaga ggaggccggc
121 ggaggagttg aatcgaacag gtcctgaggg atatagtgtc ggcagaggtg gtcgctggag
181 aggcacctct aggcccccgg aggacgtggc cgctggtcac gaggaactgc cgctgtgttt
241 tgctttgaag agccactttg ttggcgcggt aatcggtcgt ggtgggtcaa aaataaagaa
301 tatacaaagt acaacaaaca ccacaatcca aataatacaa gaacaaccag aatcattagt
361 caaaattttt ggcagcaagg caatgcaaac gaaagcaaaa gcagtgatag acaattttgt
421 taaaaagcta gaagaaaatt acaattcaga atgcggaatt gatactgcat tccaaccttc
481 tgttggaaaa gatggaagca cagataacaa tgttgttgca ggagatcggc cattgataga
541 ttgggatcaa attagagagg aaggtttgaa atggcaaaaa acaaagtggg cagatttacc
601 accaattaag aaaaactttt ataaagagtc cactgccaca agtgccatgt caaaagtaga
661 agcagatagt tggaggaaag aaaattttaa tataacgtgg gatgacttga aggatgggga
721 gaaacgacct atccccaatc ctacctgcac atttgatgac gcctttcaat gttatcctga
781 ggttatggaa aacattaaaa aggcaggttt tcaaaagcca acacctattc agtcacaggc
841 atggcccatt gtgttgcaag gaatagatct tataggagta gcccagactg gaacaggaaa
901 gacattgtgt tatttaatgc ctggatttat tcatctggtc cttcaaccca gccttaaagg
961 tcaaaggaat agacccggca tgttagttct aactcccact cgggaattag cacttcaagt
1021 agaaggagaa tgttgcaaat attcatataa agggcttcgg agtgtttgtg tatatggtgg
1081 tggaaataga gatgaacaaa tagaagagct taaaaaaggt gtagatatca taattgcaac
1141 tcccggaaga ttgaatgatc tgcaaatgag taacttcgtc aatctgaaga atataaccta
1201 cttggtttta gatgaagcag acaagatgtt ggacatggga tttgaacccc agataatgaa
1261 gattttgtta gatgtgcgcc cagataggca gacagttatg accagtgcta catggcctca
1321 ttcagttcat cgcctcgcac aatcttattt gaaagaacca atgattgtct atgttggtac
1381 attggatcta gttgctgtaa gttcagtgaa gcaaaatata attgtaacca ccgaggaaga
1441 gaaatggagt cacatgcaaa cttttctaca gagtatgtca tccacagaca aagtcattgt
1501 cttcgtttct cgaaaagctg ttgcggatca cttatcaagt gacctaatac ttggaaatat
1561 atcagtagag tctctgcatg gagatagaga acagagagat cgggagaaag cattagagaa
1621 ctttaaaaca ggcaaagtga gaatactaat tgcaactgat ctagcctcta gaggacttga
1681 tgtccatgac gttacacatg tctataattt tgactttcca cggaatattg aagaatacgt
1741 acaccgaata gggcgcacgg gaagagcagg gaggactggt gtttccatta caactttgac
1801 tagaaatgat tggagggttg cctctgaatt gattaatatt ctggaaagag caaatcagag
1861 tattccagag gagcttgtat caatggctga gaggtttaag gcacatcaac agaaaaggga
1921 aatggaaaga aaaatggaaa gacctcaagg aaggcccaag aagtttcatt aatgtcttct
1981 gtactagtgg ggtagagaat tcaagatttt ttagaaatat agtaagacgg aagtattgga
2041 catgttggca gtatgaagag accggactga tttgactgat tcttaaaata atagtgtttg
2101 aaaatataga atccagtgtt ttatactttc tttaataaaa atagaagtat ttaaacttga
2161 aaaaaaaaaa aaaa
//