LOCUS BC066889 1131 bp mRNA linear HUM 16-DEC-2006 DEFINITION Homo sapiens high-mobility group box 1, mRNA (cDNA clone MGC:86954 IMAGE:5268698), complete cds. ACCESSION BC066889 VERSION BC066889.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1131) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 1131) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (01-MAR-2004) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Miklos Palkovits, M.D., Ph.D. cDNA Library Preparation: Michael J. Brownstein (NHGRI) & Shiraki Toshiyuki and Piero Carninci (RIKEN) cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Sequencing Group at the Stanford Human Genome Center, Stanford University School of Medicine, Stanford, CA 94305 Web site: http://www-shgc.stanford.edu Contact: (Dickson, Mark) mcd@paxil.stanford.edu Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers, R. M. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 167 Row: m Column: 22 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 56806672. FEATURES Location/Qualifiers source 1..1131 /db_xref="H-InvDB:HIT000262310" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:86954 IMAGE:5268698" /tissue_type="Testis" /clone_lib="NIH_MGC_97" /lab_host="DH10B" /note="Vector: pBluescriptR" gene 1..1131 /gene="HMGB1" /gene_synonym="HMG3" /gene_synonym="SBP-1" /db_xref="GeneID:3146" /db_xref="HGNC:HGNC:4983" /db_xref="MIM:163905" CDS 80..727 /gene="HMGB1" /gene_synonym="HMG3" /gene_synonym="SBP-1" /codon_start=1 /product="high-mobility group box 1" /protein_id="AAH66889.1" /db_xref="GeneID:3146" /db_xref="HGNC:HGNC:4983" /db_xref="MIM:163905" /translation="MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKK CSERWKTMSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAF FLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIA AYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDEEDEEEEEDEEDEDEEEDDDDE" BASE COUNT 386 a 188 c 283 g 274 t ORIGIN 1 atagagacag cgccggggca agtgagagcc ggacgggcac tgggcgactc tgtgcctcgc 61 tgaggaaaaa taactaaaca tgggcaaagg agatcctaag aagccgagag gcaaaatgtc 121 atcatatgca ttttttgtgc aaacttgtcg ggaggagcat aagaagaagc acccagatgc 181 ttcagtcaac ttctcagagt tttctaagaa gtgctcagag aggtggaaga ccatgtctgc 241 taaagagaaa ggaaaatttg aagatatggc aaaagcggac aaggcccgtt atgaaagaga 301 aatgaaaacc tatatccctc ccaaagggga gacaaaaaag aagttcaagg atcccaatgc 361 acccaagagg cctccttcgg ccttcttcct cttctgctct gagtatcgcc caaaaatcaa 421 aggagaacat cctggcctgt ccattggtga tgttgcgaag aaactgggag agatgtggaa 481 taacactgct gcagatgaca agcagcctta tgaaaagaag gctgcgaagc tgaaggaaaa 541 atacgaaaag gatattgctg catatcgagc taaaggaaag cctgatgcag caaaaaaggg 601 agttgtcaag gctgaaaaaa gcaagaaaaa gaaggaagag gaggaagatg aggaagatga 661 agaggatgag gaggaggagg aagatgaaga agatgaagat gaagaagaag atgatgatga 721 tgaataagtt ggttctagcg cagttttttt tttcttgtct ataaagcatt taacccccct 781 gtacacaact cactcctttt aaagaaaaaa attgaaatgt aaggctgtgt aagatttgtt 841 tttaaactgt acagtgtctt tttttgtata gttaacacac taccgaatgt gtctttagat 901 agccctgtcc tggtggtatt ttcaatagcc actaaccttg cctggtacag tatgggggtt 961 gtaaattggc atggaaattt aaagcaggtt cttgttggtg cacagcacaa attagttata 1021 tatggggatg gtagtttttt catcttcagt tgtctctgat gcagcttata cgaaataatt 1081 gttgttctgt taactgaata ccactctgta attgcaaaaa aaaaaaaaaa a //