LOCUS BC066230 790 bp mRNA linear HUM 30-JUN-2006
DEFINITION Homo sapiens CRLF1 associated cytokine-like factor 1, mRNA (cDNA
clone MGC:79248 IMAGE:7002180), complete cds.
ACCESSION BC066230
VERSION BC066230.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 790)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 790)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (03-FEB-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Narayan Bhat
cDNA Library Preparation: Bhat Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Sequencing Group at the Stanford Human Genome
Center, Stanford University School of Medicine, Stanford, CA 94305
Web site: http://www-shgc.stanford.edu
Contact: (Dickson, Mark) mcd@paxil.stanford.edu
Dickson, M., Schmutz, J., Grimwood, J., Rodriquez, A., and Myers,
R. M.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 172 Row: h Column: 9
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 50726992.
FEATURES Location/Qualifiers
source 1..790
/db_xref="H-InvDB:HIT000262125"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:79248 IMAGE:7002180"
/tissue_type="PCR rescued clones"
/clone_lib="NIH_MGC_195"
/lab_host="DH10B"
/note="Vector: pDNR-Dual"
gene 1..790
/gene="CLCF1"
/gene_synonym="BSF3"
/gene_synonym="CISS2"
/gene_synonym="CLC"
/gene_synonym="NNT1"
/gene_synonym="NR6"
/db_xref="GeneID:23529"
/db_xref="HGNC:HGNC:17412"
/db_xref="MIM:607672"
CDS 5..682
/gene="CLCF1"
/gene_synonym="BSF3"
/gene_synonym="CISS2"
/gene_synonym="CLC"
/gene_synonym="NNT1"
/gene_synonym="NR6"
/codon_start=1
/product="cardiotrophin-like cytokine factor 1"
/protein_id="AAH66230.1"
/db_xref="GeneID:23529"
/db_xref="HGNC:HGNC:17412"
/db_xref="MIM:607672"
/translation="MDLRAGDSWGMLACLCTVLWHLPAVPALNRTGDPGPGPSIQKTY
DLTRYLEHQLRSLAGTYLNYLGPPFNEPDFNPPRLGAETLPRATVDLEVWRSLNDKLR
LTQNYEAYSHLLCYLRGLNRQAATAELRRSLAHFCTSLQGLLGSIAGVMAALGYPLPQ
PLPGTEPTWTPGPAHSDFLQKMDDFWLLKELQTWLWRSAKDFNRLKKKMQPPAAAVTL
HLGAHGF"
BASE COUNT 145 a 281 c 212 g 152 t
ORIGIN
1 ccccatggac ctccgagcag gggactcgtg ggggatgtta gcgtgcctgt gcacggtgct
61 ctggcacctc cctgcagtgc cagctctcaa tcgcacaggg gacccagggc ctggcccctc
121 catccagaaa acctatgacc tcacccgcta cctggagcac caactccgca gcttggctgg
181 gacctatctg aactacctgg gccccccttt caacgagcca gacttcaacc ctccccgcct
241 gggggcagag actctgccca gggccactgt tgacttggag gtgtggcgaa gcctcaatga
301 caaactgcgg ctgacccaga actacgaggc ctacagccac cttctgtgtt acttgcgtgg
361 cctcaaccgt caggctgcca ctgctgagct gcgccgcagc ctggcccact tctgcaccag
421 cctccagggc ctgctgggca gcattgcggg cgtcatggca gctctgggct acccactgcc
481 ccagccgctg cctgggactg aacccacttg gactcctggc cctgcccaca gtgacttcct
541 ccagaagatg gacgacttct ggctgctgaa ggagctgcag acctggctgt ggcgctcggc
601 caaggacttc aaccggctca agaagaagat gcagcctcca gcagctgcag tcaccctgca
661 cctgggggct catggcttct gacttctgac cttctcctct tcgctccccc ttcaaaccct
721 gctcccactt tgtgagagcc agccctgtat gccaacacct gttgagccag gagacagaag
781 ctgtgagcct
//