LOCUS BC065924 5755 bp mRNA linear HUM 18-MAR-2009 DEFINITION Homo sapiens small nuclear ribonucleoprotein 200kDa (U5), mRNA (cDNA clone IMAGE:6048229), partial cds. ACCESSION BC065924 VERSION BC065924.1 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 5755) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 5755) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (02-FEB-2004) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC/DCTD/DTP cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 140 Row: e Column: 1. FEATURES Location/Qualifiers source 1..5755 /db_xref="H-InvDB:HIT000262102" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:6048229" /tissue_type="Skin, melanotic melanoma." /clone_lib="NIH_MGC_72" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene <1..5755 /gene="SNRNP200" /gene_synonym="BRR2" /gene_synonym="HELIC2" /gene_synonym="U5-200KD" /db_xref="GeneID:23020" /db_xref="HGNC:HGNC:30859" /db_xref="MIM:601664" CDS <1..5466 /gene="SNRNP200" /gene_synonym="BRR2" /gene_synonym="HELIC2" /gene_synonym="U5-200KD" /codon_start=1 /product="SNRNP200 protein" /protein_id="AAH65924.1" /db_xref="GeneID:23020" /db_xref="HGNC:HGNC:30859" /db_xref="MIM:601664" /translation="DFIKVLRQHRMMILYCTLLASAQSEAEKERIMGKMEADPELSKF LYQLHETEKEDLIREERSRRERVRQSRMDTDLETMDLDQGGEALAPRQVLDLEDLVFT QGSHFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQAGF EGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINV DDFKIIYIAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVFTPE KWDIITRKGGERTYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLI GLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEI VYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTE AEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPA HTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLS LLNQQLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGIS HDDLKGDPLLDQRRLDLVHTAALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDT VQTYNQLLKPTLSEIELFRVFSLSSEFKNITVREEEKLELQKLLERVPIPVKESIEEP SAKINVLLQAFISQLKLEGFALMADMVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLN LCKMIDKRMWQSMCPLRQFRKLPEEVVKKIEKKNFPFERLYDLNHNEIGELIRMPKMG KTIHKYVHLFPKLELSVHLQPITRSTLKVELTITPDFQWDEKVHGSSEAFWILVEDVD SEVILHHEYFLLKAKYAQDEHLITFFVPVFEPLPPQYFIRVVSDRWLSCETQLPVSFR HLILPEKYPPPTELLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDN VFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNK KVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGG ENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVR PVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDIL TTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQL FSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANR PLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDA VDYLTWTFLYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSKCISIEDEMD VAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNL LRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAIRLIQA CVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVESVF DIMEMEDEERNALLQLTDSQIADVARFCNRYPNIELSYEVVDKDSIRSGGPVVVLVQL EREEEVTGPVIAPLFPQKREEGWLVVIGDAKSNSLISIKRLTLQQKAKVKLDFVAPAT GAHNYTLYFMSDAYMGCDQEYKFSVDVKEAETDSDSD" BASE COUNT 1437 a 1503 c 1512 g 1303 t ORIGIN 1 gatttcatta aagtgttgcg gcagcacagg atgatgattt tatactgtac cttgctggcc 61 agtgcacaaa gtgaagctga aaaggaaagg attatgggaa agatggaagc tgacccagag 121 ctatccaagt tcctctacca gcttcatgaa accgagaagg aggatctgat ccgagaggaa 181 aggtcccgga gagagcgagt gcgtcagtct cgaatggaca cagatctgga aaccatggat 241 ctcgaccagg gtggagaggc actggctcca cggcaggttc tggacttgga ggacctggtt 301 tttacccaag ggagccactt tatggccaat aaacgctgtc agcttcctga tggatccttc 361 cgtcgccagc gtaagggcta tgaagaggtg catgtgcctg ctctgaagcc caagcccttt 421 ggctcagaag aacaactgct tccagtggaa aagctgccaa agtatgccca ggctgggttt 481 gagggcttca aaacactgaa tcggatccag agtaagctct accgtgctgc ccttgagacg 541 gatgagaatc tgctgctgtg tgctcctact ggtgctggga agaccaacgt ggccctgatg 601 tgcatgctcc gagagattgg gaaacacata aacatggacg gcaccatcaa tgtggatgac 661 ttcaagatta tctacattgc ccccatgcgc tccttggtgc aggagatggt gggcagcttt 721 ggaaagcgcc tggccactta tggcatcact gttgctgaac tgactgggga ccaccagctg 781 tgcaaagaag agatcagtgc cactcagatc atcgtcttca cccccgagaa gtgggacatc 841 atcacccgca agggtggtga gcgcacctac acccagctgg tgcggctcat cattctggat 901 gagattcatc ttctccacga tgacagaggt cctgtcttag aagctttagt ggccagggcc 961 atccgaaaca ttgagatgac ccaagaggat gtccgactca ttggtctcag tgccacccta 1021 cccaactatg aagatgtagc cacctttcta cgtgttgacc ctgccaaggg tctcttttac 1081 tttgacaaca gcttccgtcc agtgcctctg gaacagacat atgtgggtat cacagagaaa 1141 aaagctatca agcgtttcca gatcatgaat gaaatcgtct atgaaaaaat catggaacat 1201 gctggaaaaa atcaggtgct ggtgtttgtc cactcccgga aggagactgg aaagacagcc 1261 agggccatcc gggacatgtg cctagaaaag gacactctgg gtctgtttct gagggagggc 1321 tcagcctcca cagaagtcct gcgaacagaa gctgagcagt gcaagaacct agagctgaag 1381 gatcttctgc cttatggctt tgctattcat cacgcaggca tgaccagggt tgaccgaaca 1441 ctcgtggagg atctttttgc tgataaacat attcaggttt tagtttccac agcaactcta 1501 gcttggggtg tgaatctccc tgcacataca gtcatcatca aaggcaccca ggtgtacagt 1561 ccagagaagg ggcgttggac agaactggga gcactggaca ttctgcagat gctgggacgt 1621 gccggaagac cccagtatga caccaagggt gaaggcatac tcatcacatc tcatggggag 1681 ctacagtact acctgtccct cctcaatcaa caacttccta ttgaaagcca gatggtttca 1741 aagcttcctg acatgctcaa tgcagaaatc gtgctaggaa atgtccagaa tgccaaggat 1801 gcggtgaact ggctgggcta tgcctacctc tatatccgaa tgctgcgatc cccaaccctc 1861 tatggcatct ctcatgatga cctcaaggga gatcccctgc tggaccagcg ccgactagat 1921 ctggttcata cagctgccct gatgctggac aagaacaatc tggtcaagta cgacaagaag 1981 acgggcaact tccaggtgac agaactgggc cgtatagcca gccactacta catcaccaat 2041 gatacagtgc agacttacaa ccagctgctg aagcccaccc tgagtgagat tgagcttttc 2101 agggtcttct cattgtcctc tgagttcaag aacatcacag tgagagagga ggagaagctg 2161 gagctgcaga agttgctgga gagggtgcct atccctgtaa aggagagcat tgaggaaccc 2221 agtgctaaga tcaacgttct tctgcaagcc ttcatctcac agctgaaatt ggagggcttt 2281 gcactgatgg ctgacatggt gtatgtcaca cagtcggctg gccggttgat gcgagcgata 2341 tttgaaattg tcctgaaccg aggttgggca cagcttacag acaagaccct gaacctctgc 2401 aagatgatcg acaaacgcat gtggcagtcc atgtgtcctc tgcgccagtt ccggaaactc 2461 cctgaggaag tagtgaagaa gattgagaag aagaatttcc cctttgagcg tctgtacgac 2521 ctgaatcata atgagattgg ggagcttatc cgcatgccaa agatggggaa gaccatccac 2581 aaatatgtcc atctgtttcc caagttggag ttgtcagtgc acctgcagcc tatcacacgc 2641 tccaccctga aggtggagct gaccatcacg ccagacttcc agtgggatga aaaggtgcat 2701 ggttcatccg aggctttttg gattctggtg gaggatgtgg acagcgaggt gattctgcac 2761 catgagtatt ttctcctcaa ggccaagtac gcccaggacg agcacctcat tacattcttc 2821 gtgcctgtct ttgaaccgct gccccctcag tacttcatcc gagtggtgtc tgaccgctgg 2881 ctctcttgtg agacccagct gcctgtctcc ttccggcacc tgatcttgcc ggagaagtac 2941 ccccctccaa ccgaactttt ggacctgcag cccttgcccg tgtctgctct gagaaacagt 3001 gcctttgaga gtctttacca agataaattt cctttcttca atcccatcca gacccaggtg 3061 tttaacactg tatacaacag tgacgacaac gtgtttgtgg gggcccccac gggcagcggg 3121 aagactattt gtgcagagtt tgccatcctg cgaatgctgc tgcagagctc ggaggggcgc 3181 tgtgtgtaca tcacccccat ggaggccctg gcagagcagg tatacatgga ctggtacgag 3241 aagttccagg acaggctcaa caagaaggtg gtactcctga caggcgagac cagcacagac 3301 ctgaagctgc tgggcaaagg gaacattatc atcagcaccc ctgagaagtg ggacatactt 3361 tcccggcgat ggaagcagcg caagaacgtg cagaacatca acctcttcgt ggtggatgag 3421 gtccacctta tcgggggcga gaatgggcct gtcttagaag tgatctgctc ccgaatgcgc 3481 tacatctcct cccagattga gcggcccatt cgcattgtgg cactcagctc ttcgctctcc 3541 aatgccaagg atgtggccca ctggctgggc tgcagtgcca cctccacctt caacttccat 3601 cccaatgtgc gtcccgtccc cttggagctg cacatccagg gcttcaacat cagccataca 3661 caaacccgcc tgctctccat ggccaagcct gtgtaccatg ctatcaccaa gcactcgccc 3721 aagaagcctg tcattgtctt tgtgccgtct cgcaagcaga cccgcctcac tgccattgac 3781 atcctcacca cctgtgcagc agacatccaa cggcagaggt tcttgcactg caccgagaag 3841 gatctgattc cgtacctgga gaagctaagt gacagcacgc tcaaggaaac gctgctaaat 3901 ggggtgggct acctgcatga ggggctcagc cccatggagc gacgcctggt ggagcagctc 3961 ttcagctcag gggctatcca ggtggtggtg gcttctcgga gtctctgctg gggcatgaac 4021 gtggctgccc acctggtaat catcatggat acccagtact acaatggcaa gatccacgcc 4081 tatgtggatt accccatcta tgacgtgctt cagatggtgg gccacgccaa ccgccctttg 4141 caggacgatg aggggcgctg tgtcatcatg tgtcagggct ccaagaagga tttcttcaag 4201 aagttcttat atgagccatt gccagtagaa tctcacctgg accactgtat gcatgaccac 4261 ttcaatgctg agatcgtcac caagaccatt gagaacaagc aggatgctgt ggactacctc 4321 acctggacct ttctgtaccg ccgcatgaca cagaacccca attactacaa cttgcagggc 4381 atctcccatc gtcacttgtc ggaccacttg tcagagctgg tggagcagac cctgagtgac 4441 ctggagcagt ccaagtgcat cagcatcgag gacgagatgg acgtggcgcc tctgaaccta 4501 ggcatgatcg ccgcctacta ttacatcaac tacaccacca ttgagctctt cagcatgtcc 4561 ctcaatgcca agaccaaggt gcgagggctt atcgagatca tctccaatgc agcagagtat 4621 gagaacattc ccatccggca ccatgaagac aatctcctga ggcagttggc tcagaaggtc 4681 ccccacaagc tgaataaccc taagttcaat gatccgcacg tcaagaccaa cctgctcctg 4741 caggctcact tgtctcgcat gcagctgagt gctgagttgc agtcagatac ggaggaaatc 4801 cttagtaagg caatccggct catccaggcc tgcgtggatg tcctttccag caatgggtgg 4861 ctcagccctg ctctggcagc tatggaactg gcccagatgg tcacccaagc catgtggtcc 4921 aaggactcat acctgaagca gctgccacac ttcacctctg agcatatcaa acgttgcaca 4981 gacaagggag tggagagtgt tttcgacatc atggagatgg aggatgaaga acggaacgcg 5041 ttgcttcagc tgactgacag ccagattgca gatgtggctc gcttttgtaa ccgctaccct 5101 aatatcgaac tatcttatga ggtggtagat aaggacagca tccgcagtgg cgggccagtt 5161 gtggtgctgg tgcagctgga gcgagaggag gaagtcacag gccctgtcat tgcgcctctc 5221 ttcccgcaga aacgtgaaga gggctggttg gtggtgattg gagatgccaa gtccaatagc 5281 ctcatctcca tcaagaggct gaccttgcag cagaaggcca aggtgaagtt ggactttgtg 5341 gccccagcca ctggtgccca caactacact ctgtacttca tgagtgacgc ttacatggga 5401 tgtgaccagg agtacaaatt cagcgtggat gtgaaagaag ctgagacaga cagtgattca 5461 gattgagtcc tgaggcattt acttttgggt aaaggagagt tgagcctgaa ttaggaatgt 5521 gtacattgta ggaatcctgg ttgtggggac caggtctgtg ggcctcaggt ctggccagcc 5581 agggctggtg ctgtccccgc ctacctccac ttcctttccc ttgctcactc tggatccagt 5641 gacagcaggt gtcatgggtc aagcataaat catatatagc attttcaggc atgttcctgg 5701 tagttctttt gagtctgaca ttctaataaa ataatttgta gaaaaaaaaa aaaaa //