LOCUS       BC065924                5755 bp    mRNA    linear   HUM 18-MAR-2009
DEFINITION  Homo sapiens small nuclear ribonucleoprotein 200kDa (U5), mRNA
            (cDNA clone IMAGE:6048229), partial cds.
ACCESSION   BC065924
VERSION     BC065924.1
KEYWORDS    .
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 5755)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
   PUBMED   12477932
REFERENCE   2  (bases 1 to 5755)
  CONSRTM   NIH MGC Project
  TITLE     Direct Submission
  JOURNAL   Submitted (02-FEB-2004) National Institutes of Health, Mammalian
            Gene Collection (MGC), Bethesda, MD 20892-2590, USA
  REMARK    NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT     Contact: MGC help desk
            Email: cgapbs-r@mail.nih.gov
            Tissue Procurement: ATCC/DCTD/DTP
            cDNA Library Preparation: Life Technologies, Inc.
            cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
            DNA Sequencing by: National Institutes of Health Intramural
            Sequencing Center (NISC),
            Gaithersburg, Maryland;
            Web site: http://www.nisc.nih.gov/
            Contact: nisc_mgc@nhgri.nih.gov
            Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
            Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
            Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
            Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
            Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
            McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
            Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
            Young,A., Zhang,L.-H. and Green,E.D.
            
            Clone distribution: MGC clone distribution information can be found
            through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
            Series: IRAK Plate: 140 Row: e Column: 1.
FEATURES             Location/Qualifiers
     source          1..5755
                     /db_xref="H-InvDB:HIT000262102"
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /clone="IMAGE:6048229"
                     /tissue_type="Skin, melanotic melanoma."
                     /clone_lib="NIH_MGC_72"
                     /lab_host="DH10B"
                     /note="Vector: pCMV-SPORT6"
     gene            <1..5755
                     /gene="SNRNP200"
                     /gene_synonym="BRR2"
                     /gene_synonym="HELIC2"
                     /gene_synonym="U5-200KD"
                     /db_xref="GeneID:23020"
                     /db_xref="HGNC:HGNC:30859"
                     /db_xref="MIM:601664"
     CDS             <1..5466
                     /gene="SNRNP200"
                     /gene_synonym="BRR2"
                     /gene_synonym="HELIC2"
                     /gene_synonym="U5-200KD"
                     /codon_start=1
                     /product="SNRNP200 protein"
                     /protein_id="AAH65924.1"
                     /db_xref="GeneID:23020"
                     /db_xref="HGNC:HGNC:30859"
                     /db_xref="MIM:601664"
                     /translation="DFIKVLRQHRMMILYCTLLASAQSEAEKERIMGKMEADPELSKF
                     LYQLHETEKEDLIREERSRRERVRQSRMDTDLETMDLDQGGEALAPRQVLDLEDLVFT
                     QGSHFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQAGF
                     EGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINV
                     DDFKIIYIAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVFTPE
                     KWDIITRKGGERTYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLI
                     GLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEI
                     VYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTE
                     AEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPA
                     HTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLS
                     LLNQQLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGIS
                     HDDLKGDPLLDQRRLDLVHTAALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDT
                     VQTYNQLLKPTLSEIELFRVFSLSSEFKNITVREEEKLELQKLLERVPIPVKESIEEP
                     SAKINVLLQAFISQLKLEGFALMADMVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLN
                     LCKMIDKRMWQSMCPLRQFRKLPEEVVKKIEKKNFPFERLYDLNHNEIGELIRMPKMG
                     KTIHKYVHLFPKLELSVHLQPITRSTLKVELTITPDFQWDEKVHGSSEAFWILVEDVD
                     SEVILHHEYFLLKAKYAQDEHLITFFVPVFEPLPPQYFIRVVSDRWLSCETQLPVSFR
                     HLILPEKYPPPTELLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDN
                     VFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNK
                     KVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGG
                     ENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVR
                     PVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDIL
                     TTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQL
                     FSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANR
                     PLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDA
                     VDYLTWTFLYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSKCISIEDEMD
                     VAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNL
                     LRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAIRLIQA
                     CVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVESVF
                     DIMEMEDEERNALLQLTDSQIADVARFCNRYPNIELSYEVVDKDSIRSGGPVVVLVQL
                     EREEEVTGPVIAPLFPQKREEGWLVVIGDAKSNSLISIKRLTLQQKAKVKLDFVAPAT
                     GAHNYTLYFMSDAYMGCDQEYKFSVDVKEAETDSDSD"
BASE COUNT         1437 a         1503 c         1512 g         1303 t
ORIGIN      
        1 gatttcatta aagtgttgcg gcagcacagg atgatgattt tatactgtac cttgctggcc
       61 agtgcacaaa gtgaagctga aaaggaaagg attatgggaa agatggaagc tgacccagag
      121 ctatccaagt tcctctacca gcttcatgaa accgagaagg aggatctgat ccgagaggaa
      181 aggtcccgga gagagcgagt gcgtcagtct cgaatggaca cagatctgga aaccatggat
      241 ctcgaccagg gtggagaggc actggctcca cggcaggttc tggacttgga ggacctggtt
      301 tttacccaag ggagccactt tatggccaat aaacgctgtc agcttcctga tggatccttc
      361 cgtcgccagc gtaagggcta tgaagaggtg catgtgcctg ctctgaagcc caagcccttt
      421 ggctcagaag aacaactgct tccagtggaa aagctgccaa agtatgccca ggctgggttt
      481 gagggcttca aaacactgaa tcggatccag agtaagctct accgtgctgc ccttgagacg
      541 gatgagaatc tgctgctgtg tgctcctact ggtgctggga agaccaacgt ggccctgatg
      601 tgcatgctcc gagagattgg gaaacacata aacatggacg gcaccatcaa tgtggatgac
      661 ttcaagatta tctacattgc ccccatgcgc tccttggtgc aggagatggt gggcagcttt
      721 ggaaagcgcc tggccactta tggcatcact gttgctgaac tgactgggga ccaccagctg
      781 tgcaaagaag agatcagtgc cactcagatc atcgtcttca cccccgagaa gtgggacatc
      841 atcacccgca agggtggtga gcgcacctac acccagctgg tgcggctcat cattctggat
      901 gagattcatc ttctccacga tgacagaggt cctgtcttag aagctttagt ggccagggcc
      961 atccgaaaca ttgagatgac ccaagaggat gtccgactca ttggtctcag tgccacccta
     1021 cccaactatg aagatgtagc cacctttcta cgtgttgacc ctgccaaggg tctcttttac
     1081 tttgacaaca gcttccgtcc agtgcctctg gaacagacat atgtgggtat cacagagaaa
     1141 aaagctatca agcgtttcca gatcatgaat gaaatcgtct atgaaaaaat catggaacat
     1201 gctggaaaaa atcaggtgct ggtgtttgtc cactcccgga aggagactgg aaagacagcc
     1261 agggccatcc gggacatgtg cctagaaaag gacactctgg gtctgtttct gagggagggc
     1321 tcagcctcca cagaagtcct gcgaacagaa gctgagcagt gcaagaacct agagctgaag
     1381 gatcttctgc cttatggctt tgctattcat cacgcaggca tgaccagggt tgaccgaaca
     1441 ctcgtggagg atctttttgc tgataaacat attcaggttt tagtttccac agcaactcta
     1501 gcttggggtg tgaatctccc tgcacataca gtcatcatca aaggcaccca ggtgtacagt
     1561 ccagagaagg ggcgttggac agaactggga gcactggaca ttctgcagat gctgggacgt
     1621 gccggaagac cccagtatga caccaagggt gaaggcatac tcatcacatc tcatggggag
     1681 ctacagtact acctgtccct cctcaatcaa caacttccta ttgaaagcca gatggtttca
     1741 aagcttcctg acatgctcaa tgcagaaatc gtgctaggaa atgtccagaa tgccaaggat
     1801 gcggtgaact ggctgggcta tgcctacctc tatatccgaa tgctgcgatc cccaaccctc
     1861 tatggcatct ctcatgatga cctcaaggga gatcccctgc tggaccagcg ccgactagat
     1921 ctggttcata cagctgccct gatgctggac aagaacaatc tggtcaagta cgacaagaag
     1981 acgggcaact tccaggtgac agaactgggc cgtatagcca gccactacta catcaccaat
     2041 gatacagtgc agacttacaa ccagctgctg aagcccaccc tgagtgagat tgagcttttc
     2101 agggtcttct cattgtcctc tgagttcaag aacatcacag tgagagagga ggagaagctg
     2161 gagctgcaga agttgctgga gagggtgcct atccctgtaa aggagagcat tgaggaaccc
     2221 agtgctaaga tcaacgttct tctgcaagcc ttcatctcac agctgaaatt ggagggcttt
     2281 gcactgatgg ctgacatggt gtatgtcaca cagtcggctg gccggttgat gcgagcgata
     2341 tttgaaattg tcctgaaccg aggttgggca cagcttacag acaagaccct gaacctctgc
     2401 aagatgatcg acaaacgcat gtggcagtcc atgtgtcctc tgcgccagtt ccggaaactc
     2461 cctgaggaag tagtgaagaa gattgagaag aagaatttcc cctttgagcg tctgtacgac
     2521 ctgaatcata atgagattgg ggagcttatc cgcatgccaa agatggggaa gaccatccac
     2581 aaatatgtcc atctgtttcc caagttggag ttgtcagtgc acctgcagcc tatcacacgc
     2641 tccaccctga aggtggagct gaccatcacg ccagacttcc agtgggatga aaaggtgcat
     2701 ggttcatccg aggctttttg gattctggtg gaggatgtgg acagcgaggt gattctgcac
     2761 catgagtatt ttctcctcaa ggccaagtac gcccaggacg agcacctcat tacattcttc
     2821 gtgcctgtct ttgaaccgct gccccctcag tacttcatcc gagtggtgtc tgaccgctgg
     2881 ctctcttgtg agacccagct gcctgtctcc ttccggcacc tgatcttgcc ggagaagtac
     2941 ccccctccaa ccgaactttt ggacctgcag cccttgcccg tgtctgctct gagaaacagt
     3001 gcctttgaga gtctttacca agataaattt cctttcttca atcccatcca gacccaggtg
     3061 tttaacactg tatacaacag tgacgacaac gtgtttgtgg gggcccccac gggcagcggg
     3121 aagactattt gtgcagagtt tgccatcctg cgaatgctgc tgcagagctc ggaggggcgc
     3181 tgtgtgtaca tcacccccat ggaggccctg gcagagcagg tatacatgga ctggtacgag
     3241 aagttccagg acaggctcaa caagaaggtg gtactcctga caggcgagac cagcacagac
     3301 ctgaagctgc tgggcaaagg gaacattatc atcagcaccc ctgagaagtg ggacatactt
     3361 tcccggcgat ggaagcagcg caagaacgtg cagaacatca acctcttcgt ggtggatgag
     3421 gtccacctta tcgggggcga gaatgggcct gtcttagaag tgatctgctc ccgaatgcgc
     3481 tacatctcct cccagattga gcggcccatt cgcattgtgg cactcagctc ttcgctctcc
     3541 aatgccaagg atgtggccca ctggctgggc tgcagtgcca cctccacctt caacttccat
     3601 cccaatgtgc gtcccgtccc cttggagctg cacatccagg gcttcaacat cagccataca
     3661 caaacccgcc tgctctccat ggccaagcct gtgtaccatg ctatcaccaa gcactcgccc
     3721 aagaagcctg tcattgtctt tgtgccgtct cgcaagcaga cccgcctcac tgccattgac
     3781 atcctcacca cctgtgcagc agacatccaa cggcagaggt tcttgcactg caccgagaag
     3841 gatctgattc cgtacctgga gaagctaagt gacagcacgc tcaaggaaac gctgctaaat
     3901 ggggtgggct acctgcatga ggggctcagc cccatggagc gacgcctggt ggagcagctc
     3961 ttcagctcag gggctatcca ggtggtggtg gcttctcgga gtctctgctg gggcatgaac
     4021 gtggctgccc acctggtaat catcatggat acccagtact acaatggcaa gatccacgcc
     4081 tatgtggatt accccatcta tgacgtgctt cagatggtgg gccacgccaa ccgccctttg
     4141 caggacgatg aggggcgctg tgtcatcatg tgtcagggct ccaagaagga tttcttcaag
     4201 aagttcttat atgagccatt gccagtagaa tctcacctgg accactgtat gcatgaccac
     4261 ttcaatgctg agatcgtcac caagaccatt gagaacaagc aggatgctgt ggactacctc
     4321 acctggacct ttctgtaccg ccgcatgaca cagaacccca attactacaa cttgcagggc
     4381 atctcccatc gtcacttgtc ggaccacttg tcagagctgg tggagcagac cctgagtgac
     4441 ctggagcagt ccaagtgcat cagcatcgag gacgagatgg acgtggcgcc tctgaaccta
     4501 ggcatgatcg ccgcctacta ttacatcaac tacaccacca ttgagctctt cagcatgtcc
     4561 ctcaatgcca agaccaaggt gcgagggctt atcgagatca tctccaatgc agcagagtat
     4621 gagaacattc ccatccggca ccatgaagac aatctcctga ggcagttggc tcagaaggtc
     4681 ccccacaagc tgaataaccc taagttcaat gatccgcacg tcaagaccaa cctgctcctg
     4741 caggctcact tgtctcgcat gcagctgagt gctgagttgc agtcagatac ggaggaaatc
     4801 cttagtaagg caatccggct catccaggcc tgcgtggatg tcctttccag caatgggtgg
     4861 ctcagccctg ctctggcagc tatggaactg gcccagatgg tcacccaagc catgtggtcc
     4921 aaggactcat acctgaagca gctgccacac ttcacctctg agcatatcaa acgttgcaca
     4981 gacaagggag tggagagtgt tttcgacatc atggagatgg aggatgaaga acggaacgcg
     5041 ttgcttcagc tgactgacag ccagattgca gatgtggctc gcttttgtaa ccgctaccct
     5101 aatatcgaac tatcttatga ggtggtagat aaggacagca tccgcagtgg cgggccagtt
     5161 gtggtgctgg tgcagctgga gcgagaggag gaagtcacag gccctgtcat tgcgcctctc
     5221 ttcccgcaga aacgtgaaga gggctggttg gtggtgattg gagatgccaa gtccaatagc
     5281 ctcatctcca tcaagaggct gaccttgcag cagaaggcca aggtgaagtt ggactttgtg
     5341 gccccagcca ctggtgccca caactacact ctgtacttca tgagtgacgc ttacatggga
     5401 tgtgaccagg agtacaaatt cagcgtggat gtgaaagaag ctgagacaga cagtgattca
     5461 gattgagtcc tgaggcattt acttttgggt aaaggagagt tgagcctgaa ttaggaatgt
     5521 gtacattgta ggaatcctgg ttgtggggac caggtctgtg ggcctcaggt ctggccagcc
     5581 agggctggtg ctgtccccgc ctacctccac ttcctttccc ttgctcactc tggatccagt
     5641 gacagcaggt gtcatgggtc aagcataaat catatatagc attttcaggc atgttcctgg
     5701 tagttctttt gagtctgaca ttctaataaa ataatttgta gaaaaaaaaa aaaaa
//