LOCUS BC065910 831 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens CDC42 effector protein (Rho GTPase binding) 5, mRNA
(cDNA clone MGC:71153 IMAGE:6572564), complete cds.
ACCESSION BC065910
VERSION BC065910.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 831)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 831)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-FEB-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 50 Row: n Column: 3
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 30089965.
FEATURES Location/Qualifiers
source 1..831
/db_xref="H-InvDB:HIT000262088"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:71153 IMAGE:6572564"
/tissue_type="Pancreas, epithelioid carcinoma"
/clone_lib="NIH_MGC_42"
/lab_host="DH10B-R"
/note="Vector: pOTB7"
gene 1..831
/gene="CDC42EP5"
/gene_synonym="Borg3"
/gene_synonym="CEP5"
/gene_synonym="MGC21945"
/db_xref="GeneID:148170"
/db_xref="HGNC:HGNC:17408"
/db_xref="MIM:609171"
CDS 274..720
/gene="CDC42EP5"
/gene_synonym="Borg3"
/gene_synonym="CEP5"
/gene_synonym="MGC21945"
/codon_start=1
/product="CDC42 effector protein (Rho GTPase binding) 5"
/protein_id="AAH65910.1"
/db_xref="GeneID:148170"
/db_xref="HGNC:HGNC:17408"
/db_xref="MIM:609171"
/translation="MPVLKQLGPAQPKKRPDRGALSISAPLGDFRHTLHVGRGGDAFG
DTSFLSRHGGGPPPEPRAPPAGAPRSPPPPAVPQSAAPSPADPLLSFHLDLGPSMLDA
VLGVMDAARPEAAAAKPDAEPRPGTQPPQARCRPNADLELNDVIGL"
BASE COUNT 149 a 307 c 273 g 102 t
ORIGIN
1 tgggggataa gaaagcctgg gaggggcctg tgccaaaacc ctctctgcct ggggactggg
61 cggtgattcc gcttctgcct gggctcctgc catggccccc gagaggggct gacactttag
121 ctcccggtgc aggtgagaac ccgcccggag gaagaaggaa ggcgcgggcc ggggattagg
181 agacggaggc ggactcggag ccagggaacc aggggtccgg gctagagctg gagtcgtgag
241 cgcgcgcccg ccccgctctg ggaggaccgc gagatgcccg tgctgaagca gctgggcccc
301 gcgcagccca agaagcggcc tgatcgcggc gccctgtcca tctccgcgcc gctcggcgac
361 ttccggcaca cgctgcacgt ggggcgcggc ggcgacgcct tcggggacac ctcgttcctg
421 agccgccacg gcggcgggcc gccccccgag ccccgggcgc cccccgcggg ggccccgcgc
481 tccccgccgc cgcccgccgt cccgcagtcc gcagcgccct cgcctgccga cccgctgctg
541 tccttccacc tggatctggg gccctccatg ctggacgcgg tgctgggcgt catggacgcg
601 gcgcgcccgg aggcggctgc cgccaagccc gacgcggaac cccgccccgg gacgcagccc
661 ccccaggccc gctgccgccc caacgcggac ctcgagctga acgacgtcat cggcctctag
721 gttccctcat tccccgcgcc cttcccgccc ggcaccccac ttctgtatac ataaacggcc
781 aaggtgtgta aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa a
//