LOCUS BC065829 1278 bp mRNA linear HUM 27-JAN-2004
DEFINITION Homo sapiens transgelin, mRNA (cDNA clone MGC:75461
IMAGE:30399241), complete cds.
ACCESSION BC065829
VERSION BC065829.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1278)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1278)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (26-JAN-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Dr. Michael Brownstein
cDNA Library Preparation: Invitrogen Corp
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Steven Jones, Jennifer Asano, Ian Bosdet, Yaron Butterfield,
Susanna Chan, Readman Chiu, Chris Fjell, Erin Garland, Ran Guin,
Letticia Hsiao, Martin Krzywinski, Reta Kutsche, Oliver Lee, Soo
Sen Lee, Victor Ling, Carrie Mathewson, Candice McLeavy, Steven
Ness, Pawan Pandoh, Anna-Liisa Prabhu, Parvaneh Saeedi, Jacqueline
Schein, Duane Smailus, Michael Smith, Lorraine Spence, Jeff Stott,
Michael Thorne, Miranada Tsai, Natasja van den Bosch, Jill Vardy,
George Yang, Scott Zuyderduyn, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 141 Row: p Column: 9
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 12621918.
FEATURES Location/Qualifiers
source 1..1278
/db_xref="H-InvDB:HIT000262069"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:75461 IMAGE:30399241"
/tissue_type="White Matter pool- 5 brain tissues- femoral
artery, olfactory tract, optic tract, cerebellar white
matter, cerebral white matter."
/clone_lib="NIH_MGC_181"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6.1"
gene 1..1278
/gene="TAGLN"
/gene_synonym="SM22"
/gene_synonym="SMCC"
/gene_synonym="WS3-10"
/db_xref="GeneID:6876"
/db_xref="MIM:600818"
CDS 206..811
/gene="TAGLN"
/gene_synonym="SM22"
/gene_synonym="SMCC"
/gene_synonym="WS3-10"
/codon_start=1
/product="TAGLN protein"
/protein_id="AAH65829.1"
/db_xref="GeneID:6876"
/db_xref="MIM:600818"
/translation="MANKGPSYGMSREVQSKIEKKYDEELEERLVEWIIVQCGPDVGR
PDRGRLGFQVWLKNGVILSKLVNSLYPDGSKPVKVPENPPSMVFKQMEQVAQFLKAAE
DYGVIKTDMFQTVDLFEGKDMAAVQRTLMALGSLAVTKNDGHYRGDPNWFMKKAQEHK
REFTESQLQEGKHVIGLQMGSNRGASQAGMTGYGRPRQIIS"
misc_feature 278..616
/gene="TAGLN"
/gene_synonym="SM22"
/gene_synonym="SMCC"
/gene_synonym="WS3-10"
/note="CH; Region: Calponin homology domain"
/db_xref="CDD:cd00014"
misc_feature 728..805
/gene="TAGLN"
/gene_synonym="SM22"
/gene_synonym="SMCC"
/gene_synonym="WS3-10"
/note="Calponin; Region: Calponin family repeat"
/db_xref="CDD:pfam00402"
BASE COUNT 318 a 355 c 363 g 242 t
ORIGIN
1 gaggggtctc accagagagg gagccggggg agtgcgctcc tgcgtccatc ctcagaccag
61 tgtgtccctc ccaacctctg acccctctga ggccagggga tgggttcggc ttcctttggt
121 acctcttttg gaagtctctt cagacaaaca ctggagagaa ggcacagcac cctagggtga
181 catcagtgga cagctttccc cagacatggc caacaagggt ccttcctatg gcatgagccg
241 cgaagtgcag tccaaaatcg agaagaagta tgacgaggag ctggaggagc ggctggtgga
301 gtggatcata gtgcagtgtg gccctgatgt gggccgccca gaccgtgggc gcttgggctt
361 ccaggtctgg ctgaagaatg gcgtgattct gagcaagctg gtgaacagcc tgtaccctga
421 tggctccaag ccggtgaagg tgcccgagaa cccaccctcc atggtcttca agcagatgga
481 gcaggtggct cagttcctga aggcggctga ggactatggg gtcatcaaga ctgacatgtt
541 ccagactgtt gacctctttg aaggcaaaga catggcagca gtgcagagga ccctgatggc
601 tttgggcagc ttggcagtga ccaagaatga tgggcactac cgtggagatc ccaactggtt
661 tatgaagaaa gcgcaggagc ataagaggga attcacagag agccagctgc aggagggaaa
721 gcatgtcatt ggccttcaga tgggcagcaa cagaggggcc tcccaggccg gcatgacagg
781 ctacggacga cctcggcaga tcatcagtta gagcggagag ggctagccct gagcccggcc
841 ctcccccagc tccttggctg cagccatccc gcttagcctg cctcacccac acccgtgtgg
901 taccttcagc cctggccaag ctttgaggct ctgtcactga gcaatggtaa ctgcacctgg
961 gcagctcctc cctgtgcccc cagcctcagc ccaacttctt acccgaaagc atcactgcct
1021 tggcccctcc ctcccggctg cccccatcac ctctactgtc tcctccctgg gctaagcagg
1081 ggagaagcgg gctgggggta gcctggatgt gggccaagtc cactgtcctc cttggcggca
1141 aaagcccatt gaagaagaac cagcccagcc tgccccctat cttgtcctgg aatatttttg
1201 gggttggaac tcaaaaaaaa aaaaaaaaaa aatcaatctt taaaaaaaaa aaaaaaaaaa
1261 aaaaaaaaaa aaaaaaaa
//