LOCUS BC065702 1984 bp mRNA linear HUM 09-DEC-2005
DEFINITION Homo sapiens choroideremia (Rab escort protein 1), mRNA (cDNA clone
IMAGE:6527430), complete cds.
ACCESSION BC065702
VERSION BC065702.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1984)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1984)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (26-JAN-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: Genome Sequence Centre,
BC Cancer Agency, Vancouver, BC, Canada
info@bcgsc.bc.ca
Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson
Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen
Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel
Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave
Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth
Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao,
Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR
Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang,
Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 141 Row: l Column: 22
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 50053828
This clone has the following problem: The cds is short compared to
the longest cds in the locus.
FEATURES Location/Qualifiers
source 1..1984
/db_xref="H-InvDB:HIT000261984"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:6527430"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_71"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1984
/gene="CHM"
/gene_synonym="FLJ38564"
/gene_synonym="GGTA"
/gene_synonym="HSD-32"
/gene_synonym="REP-1"
/db_xref="GeneID:1121"
/db_xref="HGNC:HGNC:1940"
/db_xref="IMGT/GENE-DB:1940"
/db_xref="MIM:300390"
CDS 167..616
/gene="CHM"
/gene_synonym="FLJ38564"
/gene_synonym="GGTA"
/gene_synonym="HSD-32"
/gene_synonym="REP-1"
/codon_start=1
/product="CHM protein"
/protein_id="AAH65702.1"
/db_xref="GeneID:1121"
/db_xref="HGNC:HGNC:1940"
/db_xref="IMGT/GENE-DB:1940"
/db_xref="MIM:300390"
/translation="MNYLFFFLTTSGLYCLSGSHGSNVKYIVLTYFNCSWSLTSPGFR
DVLKGSQLWQVTDSWEMERTKEYSSCLTFLPTADIVQARVMEELNLLASQAAPIPTSQ
CTAPPHLFSPLSLTSPFIMSHKSGTVGSHYNLLCHRDSIFLISNHVS"
BASE COUNT 669 a 343 c 313 g 659 t
ORIGIN
1 caagactctg tctcacaaaa aaaaaaaaaa ggggctgtac ataggcagca aactaagctg
61 cagtgatgtt gcctatattt aaattttctc aaatggccaa gctctgatgg tctactttat
121 ttgagcaata gttgagactt ataattgcct ataaataaac aaacaaatga actatttgtt
181 tttttttctc acaacatctg gcctatattg tctgtcagga agccatggct ccaatgtaaa
241 gtacatagtt cttacatact tcaactgcag ctggtccctg acctcaccag gtttcagaga
301 tgttcttaaa ggaagccagc tgtggcaggt cacagattca tgggaaatgg aaagaaccaa
361 ggaatatagc tcttgcctca cctttctacc cactgcagat atagttcaag ccagagtaat
421 ggaagaactt aacttactag cctctcaggc tgctcctatc cctacctccc agtgtacagc
481 ccctccccat ctctttagtc ccctttccct cacttcccct tttataatgt cacacaaatc
541 agggacagta ggatcacatt ataacctact ttgtcatagg gattcgattt ttcttatatc
601 aaatcatgtt tcctgaaacc cagctggggc atatgcactc aatgtctaat acatacttat
661 taatgtaccg gatattggcc ttgcccctgg atatcagcaa tatattataa aaggttccag
721 tagatgagac gattgagtct gaatacaatt gcagtaaatt gtgccaataa agatattgta
781 ctgttacggt cttagagtta aagccgcttg aatgcagcat gcacattcat gtaaacagac
841 aatcagggta ggcctagaat aaccacaaaa attctattgg ccttactgca gccacctata
901 tgtagaacaa tggaggagat agtttgtggt ccattattgt accctgtttc atccattagc
961 atcagaatct ctctttcagg tcatttatta aatatgattg aaatgtttaa aagttcctga
1021 acatgattca tgatgattaa aatatcatac aactgataaa agactttaag aactttatat
1081 atttcctgtt gcctcaaaat gtaacagaaa ttattcttag agctttgatt ttagctatcc
1141 taattactgc aaataaatat ttgttcttat agttttaaat caaaaagaaa agtcttgtta
1201 taaaacctta agcttgaaat catattaata aaatgtattg tacatagtgg aaaattttca
1261 gtagctaatt taaaatttca gaaaatgcta ttaaagaatt ttgattcaag tatttaaact
1321 gtttagttat gcatgcttct tattaaccga aaatgataat accatttagt ttagtgatca
1381 gtatgagaag caatacctaa tcctatgttg ctattgtatt ttttcctagt tggtgtgcct
1441 gctcagaaaa acatatactg tatgtgtata catacctgtg tatatataaa aggtcaattt
1501 atatattttt ctataggaaa atggagtaac aagttcccta tctcccatat ttatttgtcc
1561 atagtaaaat ggccacattg atgataattt ctagaactag tttctgagat tgtcagccct
1621 ttgtctaaaa taatggcagt attaatgatt gacttctgtc actgccatag ttacctggat
1681 tgtcagcctt ggtagccttt gtctaaagtc ctaaagagtt ccaaaaaaaa tgtgttgaaa
1741 tttaattgct aaatagtggt tggtgattct ttacagtagg aattgtaata attttcttgc
1801 aaataagtta tttactgcta ttgatattga ataatttgtc ttttattcag atatatttca
1861 aaaagcatga atatatgatt attcataaat tgtatacttt accagtaagt tttcagagga
1921 aataaagact tttaaatcct tttcaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
1981 aaaa
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