LOCUS BC065545 2781 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens adenosine deaminase, RNA-specific, B1 (RED1 homolog
rat), mRNA (cDNA clone MGC:70825 IMAGE:6014605), complete cds.
ACCESSION BC065545
VERSION BC065545.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2781)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2781)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (26-JAN-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 140 Row: b Column: 16
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 4501918.
FEATURES Location/Qualifiers
source 1..2781
/db_xref="H-InvDB:HIT000261951"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:70825 IMAGE:6014605"
/tissue_type="Testis, embryonal carcinoma"
/clone_lib="NIH_MGC_92"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2781
/gene="ADARB1"
/gene_synonym="ADAR2"
/gene_synonym="ADAR2a"
/gene_synonym="ADAR2a-L1"
/gene_synonym="ADAR2a-L2"
/gene_synonym="ADAR2a-L3"
/gene_synonym="ADAR2b"
/gene_synonym="ADAR2d"
/gene_synonym="ADAR2g"
/gene_synonym="DRABA2"
/gene_synonym="DRADA2"
/gene_synonym="RED1"
/db_xref="GeneID:104"
/db_xref="HGNC:HGNC:226"
/db_xref="MIM:601218"
CDS 273..2378
/gene="ADARB1"
/gene_synonym="ADAR2"
/gene_synonym="ADAR2a"
/gene_synonym="ADAR2a-L1"
/gene_synonym="ADAR2a-L2"
/gene_synonym="ADAR2a-L3"
/gene_synonym="ADAR2b"
/gene_synonym="ADAR2d"
/gene_synonym="ADAR2g"
/gene_synonym="DRABA2"
/gene_synonym="DRADA2"
/gene_synonym="RED1"
/codon_start=1
/product="adenosine deaminase, RNA-specific, B1 (RED1
homolog rat)"
/protein_id="AAH65545.1"
/db_xref="GeneID:104"
/db_xref="HGNC:HGNC:226"
/db_xref="MIM:601218"
/translation="MDIEDEENMSSSSTDVKENRNLDNVSPKDGSTPGPGEGSQLSNG
GGGGPGRKRPLEEGSNGHSKYRLKKRRKTPGPVLPKNALMQLNEIKPGLQYTLLSQTG
PVHAPLFVMSVEVNGQVFEGSGPTKKKAKLHAAEKALRSFVQFPNASEAHLAMGRTLS
VNTDFTSDQADFPDTLFNGFETPDKAEPPFYVGSNGDDSFSSSGDLSLSASPVPASLA
QPPLPALPPFPPPSGKNPVMILNELRPGLKYDFLSESGESHAKSFVMSVVVDGQFFEG
SGRNKKLAKARAAQSALAAIFNLHLDQTPSRQPIPSEGLQLHLPQVLADAVSRLVLGK
FGDLTDNFSSPHARRKVLAGVVMTTGTDVKDAKVISVSTGTKCINGEYMSDRGLALND
CHAEIISRRSLLRFLYTQLELYLNNKDDQKRSIFQKSERGGFRLKENVQFHLYISTSP
CGDARIFSPHEPILEEPADRHPNRKARGQLRTKIESGEGTIPVRSNASIQTWDGVLQG
ERLLTMSCSDKIARWNVVGIQGSLLSIFVEPIYFSSIILGSLYHGDHLSRAMYQRISN
IEDLPPLYTLNKPLLSGISNAEARQPGKAPNFSVNWTVGDSAIEVINATTGKDELGRA
SRLCKHALYCRWMRVHGKVPSHLLRSKITKPNVYHESKLAAKEYQAAKARLFTAFIKA
GLGAWVEKPTEQDQFSLTP"
BASE COUNT 670 a 756 c 769 g 586 t
ORIGIN
1 cgaagcgtgg ggcgcgcgtg cggaggacca ggcgcggcgc ggctgcggct gagagtggag
61 cctttcaggc tggcatggag agcttaaggg gcaactgaag gagacacact ggccaagcgc
121 ggagttctgc ttacttcagt cctgctgaga tactctctca gtccgctcgc accgaaggaa
181 gctgccttgg gatcagagca gacataaagc tagaaaaatt tcaagacaga aacagtctcc
241 gccagtcaag aaaccctcaa aagtattttg ccatggatat agaagatgaa gaaaacatga
301 gttccagcag cactgatgtg aaggaaaacc gcaatctgga caacgtgtcc cccaaggatg
361 gcagcacacc tgggcctggc gagggctctc agctctccaa tgggggtggt ggtggccccg
421 gcagaaagcg gcccctggag gagggcagca atggccactc caagtaccgc ctgaagaaaa
481 ggaggaaaac accagggccc gtcctcccca agaacgccct gatgcagctg aatgagatca
541 agcctggttt gcagtacaca ctcctgtccc agactgggcc cgtgcacgcg cctttgtttg
601 tcatgtctgt ggaggtgaat ggccaggttt ttgagggctc tggtcccaca aagaaaaagg
661 caaaactcca tgctgctgag aaggccttga ggtctttcgt tcagtttcct aatgcctctg
721 aggcccacct ggccatgggg aggaccctgt ctgtcaacac ggacttcaca tctgaccagg
781 ccgacttccc tgacacgctc ttcaatggtt ttgaaactcc tgacaaggcg gagcctccct
841 tttacgtggg ctccaatggg gatgactcct tcagttccag cggggacctc agcttgtctg
901 cttccccggt gcctgccagc ctagcccagc ctcctctccc tgccttacca ccattcccac
961 ccccgagtgg gaagaatccc gtgatgatct tgaacgaact gcgcccagga ctcaagtatg
1021 acttcctctc cgagagcggg gagagccatg ccaagagctt cgtcatgtct gtggtcgtgg
1081 atggtcagtt ctttgaaggc tcggggagaa acaagaagct tgccaaggcc cgggctgcgc
1141 agtctgccct ggccgccatt tttaacttgc acttggatca gacgccatct cgccagccta
1201 ttcccagtga gggtcttcag ctgcatttac cgcaggtttt agctgacgct gtctcacgcc
1261 tggtcctggg taagtttggt gacctgaccg acaacttctc ctcccctcac gctcgcagaa
1321 aagtgctggc tggagtcgtc atgacaacag gcacagatgt taaagatgcc aaggtgataa
1381 gtgtttctac aggaacaaaa tgtattaatg gtgaatacat gagtgatcgt ggccttgcat
1441 taaatgactg ccatgcagaa ataatatctc ggagatcctt gctcagattt ctttatacac
1501 aacttgagct ttacttaaat aacaaagatg atcaaaaaag atccatcttt cagaaatcag
1561 agcgaggggg gtttaggctg aaggagaatg tccagtttca tctgtacatc agcacctctc
1621 cctgtggaga tgccagaatc ttctcaccac atgagccaat cctggaagaa ccagcagata
1681 gacacccaaa tcgtaaagca agaggacagc tacggaccaa aatagagtct ggtgagggga
1741 cgattccagt gcgctccaat gcgagcatcc aaacgtggga cggggtgctg caaggggagc
1801 ggctgctcac catgtcctgc agtgacaaga ttgcacgctg gaacgtggtg ggcatccagg
1861 gatccctgct cagcattttc gtggagccca tttacttctc gagcatcatc ctgggcagcc
1921 tttaccacgg ggaccacctt tccagggcca tgtaccagcg gatctccaac atagaggacc
1981 tgccacctct ctacaccctc aacaagcctt tgctcagtgg catcagcaat gcagaagcac
2041 ggcagccagg gaaggccccc aacttcagtg tcaactggac ggtaggcgac tccgctattg
2101 aggtcatcaa cgccacgact gggaaggatg agctgggccg cgcgtcccgc ctgtgtaagc
2161 acgcgttgta ctgtcgctgg atgcgtgtgc acggcaaggt tccctcccac ttactacgct
2221 ccaagattac caaacccaac gtgtaccatg agtccaagct ggcggcaaag gagtaccagg
2281 ccgccaaggc gcgtctgttc acagccttca tcaaggcggg gctgggggcc tgggtggaga
2341 agcccaccga gcaggaccag ttctcactca cgccctgacc cgggcagaca tgatgggggg
2401 tgcagggggc tgtgggcatc cagcgtcatc ctccagaacc tcacatctga actgggggca
2461 ggtgcatacc ttggggaggg agtaggggga cacgggggac caccaggtgt ccacggttgt
2521 ccccagcatc tcacatcaga cctggggcag gtgcgcagtg tggggagggg atggggtgcg
2581 tcagggccca gcatcgccgc ctggcatctc tctgccgcag catttcccct tctgaaccgt
2641 ccagtgactg ctttcaatct cggtttacgt ttagaaattg agttctactg agtagggctt
2701 ccttaagttt aggaaaatag aaattacttt gtgtgaaatt cttgaataaa taatttattc
2761 agagctaaaa aaaaaaaaaa a
//