LOCUS BC065384 5844 bp mRNA linear HUM 19-MAR-2007 DEFINITION Homo sapiens PCF11, cleavage and polyadenylation factor subunit, homolog (S. cerevisiae), mRNA (cDNA clone MGC:65021 IMAGE:6043635), complete cds. ACCESSION BC065384 VERSION BC065384.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 5844) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 5844) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (20-JAN-2004) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: ATCC cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 119 Row: k Column: 2 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 33620744. FEATURES Location/Qualifiers source 1..5844 /db_xref="H-InvDB:HIT000261885" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:65021 IMAGE:6043635" /tissue_type="Testis, embryonal carcinoma" /clone_lib="NIH_MGC_92" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..5844 /gene="PCF11" /db_xref="GeneID:51585" /db_xref="HGNC:HGNC:30097" /db_xref="MIM:608876" CDS 238..4905 /gene="PCF11" /codon_start=1 /product="PCF11, cleavage and polyadenylation factor subunit, homolog (S. cerevisiae)" /protein_id="AAH65384.2" /db_xref="GeneID:51585" /db_xref="HGNC:HGNC:30097" /db_xref="MIM:608876" /translation="MSEQTPAEAGAAGAREDACRDYQSSLEDLTFNSKPHINMLTILA EENLPFAKEIVSLIEAQTAKAPSSEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFIC VFEKVDENTRKSLFKLRSTWDEIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIH VNPKFLNKSPEEPSTPGTVVSSPSISTPPIVPDIQKNLTQEQLIRQQLLAKQKQLLEL QQKKLELELEQAKAQLAVSLSVQQETSNLGPGSAPSKLHVSQIPPMAVKAPHQVPVQS EKSRPGPSLQIQDLKGTNRDPRLNRISQHSHGKDQSHRKEFLMNTLNQSDTKTSKTIP SEKLNSSKQEKSKSGEKITKKELDQLDSKSKSKSKSPSPLKNKLSHTKDLKNQESESM RLSDMNKRDPRLKKHLQDKTDGKDDDVKEKRKTAEKKDKDEHMKSSEHRLAGSRNKII NGIVQKQDTITEESEKQGTKPGRSSTRKRSRSRSPKSRSPIIHSPKRRDRRSPKRRQR SMSPTSTPKAGKIRQSGAKQSHMEEFTPPSREDRNAKRSTKQDIRDPRRMKKTEEERP QETTNQHSTKSGTEPKENVENWQSSKSAKRWKSGWEENKSLQQVDEHSKPPHLRHRES WSSTKGILSPRAPKQQQHRLSVDANLQIPKELTLASKRELLQKTSERLASGEITQDDF LVVVHQIRQLFQYQEGVREEQRSPFNDRFPLKRPRYEDSDKPFVDSPASRFAGLDTNQ RLTALAEDRPLFDGPSRPSVARDGPTKMIFEGPNKLSPRIDGPPTPASLRFDGSPGQM GGGGPLRFEGPQGQLGGGCPLRFEGPPGPVGTPLRFEGPIGQAGGGGFRFEGSPGLRF EGSPGGLRFEGPGGQPVGGLRFEGHRGQPVGGLRFEGPHGQPVGGLRFDNPRGQPVGG LRFEGGHGPSGAAIRFDGPHGQPGGGIRFEGPLLQQGVGMRFEGPHGQSVAGLRFEGQ HNQLGGNLRFEGPHGQPGVGIRFEGPLVQQGGGMRFEGPSVPGGGLRIEGPLGQGGPR FEGCHALRFDGQPGQPSLLPRFDGLHGQPGPRFERTPGQPGPQRFDGPPGQQVQPRFD GVPQRFDGPQHQQASRFDIPLGLQGTRFDNHPSQRLESVSFNQTGPYNDPPGNAFNAP SQGLQFQRHEQIFDSPQGPNFNGPHGPGNQSFSNPLNRASGHYFDEKNLQSSQFGNFG NIPAPMTVGNIQASQQVLSGVAQPVAFGQGQQFLPVHPQNPGFVQNPSGALPKAYPDN HLSQVDVNELFSKLLKTGILKLSQTDSATTQVSEVTAQPPPEEEEDQNEDQDVPDLTN FTVEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNRTEKDVSRK VTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEFQSVPAGP AGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYEDYQNTSSFDCTPSP SKTPVENPLNIMLNIVKNELQEPCDSPKVKEERIDTPPACTEESIATPSEIKTENDTV ESV" BASE COUNT 1909 a 1122 c 1331 g 1482 t ORIGIN 1 gtggagaaag aagcttctgt ggcggctgga agtggacgga gatcacccgc gagacggcgg 61 cgtttcatac ccgaggttcc ccctgtgtcg tcccccatcc cccctccgcg gtcagcatgt 121 ggtgaagccg gagccgcgag agagccgggg agaggaagag gagtcggaag ggaggcgggg 181 tatccagagc ggcttcagct tcagctgcag cggacctcgg aggggggccg cggcgcaatg 241 tcagagcaga cgccggccga ggccggtgct gcgggggccc gggaggacgc ctgtcgggat 301 tatcagtcat cgctcgaaga cctgaccttc aatagcaagc cgcacatcaa tatgctgacc 361 attctagccg aggagaacct gcccttcgcc aaggagatcg tctctctcat cgaggcccaa 421 accgccaagg ctccttcctc agagaagctt cctgttatgt accttatgga ttctattgtg 481 aaaaacgttg gaagagagta tctcactgcc tttactaaaa atctagttgc aacatttatt 541 tgtgtgtttg aaaaggtgga tgaaaatact aggaaaagtt tatttaagtt acgttctaca 601 tgggatgaaa tattcccttt gaagaaactt tatgccctgg atgtcagagt caattcatta 661 gatcctgctt ggcctattaa acctctaccc cccaatgtga atacgtctag catccatgtg 721 aatcctaaat ttttaaataa atcgcccgag gagccttcaa cacctggtac agtggtcagt 781 tcccctagca tctccactcc tccaattgtt cctgatatac aaaagaatct tacacaagaa 841 caactaataa ggcagcagtt actggcaaag caaaaacagt tgttagaact tcagcagaaa 901 aagctggagc ttgagctaga gcaagctaag gcacagttgg cagtttctct tagtgttcag 961 caggaaacat ccaatttagg tcctggatct gcaccatcca aattacatgt ttcacagatt 1021 ccccctatgg cagttaaagc tcctcatcag gttcctgtgc aatctgagaa aagccgtcca 1081 ggaccatcct tacaaattca ggatttaaaa ggaactaacc gggatcctcg tctgaacagg 1141 ataagccaac attctcatgg aaaagatcag agtcacagga aagaatttct aatgaacaca 1201 ttaaaccagt ctgatactaa gacaagtaaa actataccct ctgaaaaact aaattcatcc 1261 aagcaagaaa aaagtaaatc aggtgaaaaa ataaccaaga aagaacttga ccaattagat 1321 tctaaatcga aatcgaaatc gaaatcaccc tcacctttga aaaacaaatt atctcacaca 1381 aaagacttga aaaatcaaga atcggaaagt atgaggttgt ctgatatgaa caagagagat 1441 ccaagattaa aaaaacatct tcaggataag accgatggca aagatgatga tgtgaaagag 1501 aagagaaaaa ctgcagaaaa aaaggataaa gatgagcaca tgaagtcatc cgaacacaga 1561 ctggctggaa gtagaaataa aatcataaat ggcattgtac aaaaacagga tacaataaca 1621 gaagagtcag aaaaacaggg gacaaaacca gggagatcga gtactagaaa gcgatcaaga 1681 tctcgatcac ccaagtctag gtcaccaatt atacattccc caaagagaag agataggcgg 1741 tcacccaaac gaaggcaaag aagtatgtct ccaacatcga cacctaaagc tggaaagatt 1801 cgccaatctg gagctaagca gtcacatatg gaagagttta caccaccttc tagggaagac 1861 agaaatgcta agagaagtac taaacaggat attcgggatc caaggcgaat gaaaaagact 1921 gaagaggagc gaccacaaga aactacaaat cagcattcta caaagtcagg cactgaacca 1981 aaggagaatg tagaaaactg gcaaagttcc aagtctgcca aaagatggaa atctggttgg 2041 gaagaaaata aaagcttaca acaggttgat gaacatagta aacctcctca tctgaggcat 2101 agggagagct ggtcaagcac taaaggaatt ttatcacctc gagccccaaa gcagcaacag 2161 catcgattaa gtgtagatgc caatcttcag attcctaaag agttaactct tgcaagcaaa 2221 agagaattac ttcaaaagac gagtgaacgt ttagcatctg gtgaaattac acaggatgac 2281 ttccttgttg ttgtgcatca aattcgacag ctatttcagt atcaagaagg tgtgcgagaa 2341 gagcagagat ctccattcaa tgatcgtttt ccacttaagc gacctcgata tgaagattca 2401 gataaaccat ttgtagatag tccagcatca agattcgccg gcctggatac aaatcagcga 2461 cttacagctt tagctgaaga cagaccgtta tttgatggac ctagtaggcc atcagtagca 2521 agagatggcc caacgaagat gatttttgaa ggacccaata aattaagccc tcgaattgat 2581 ggacctccca caccagcttc tcttcggttt gatgggtcac caggacaaat ggggggagga 2641 ggccctttga gatttgaggg gccacaaggt cagctaggag gtgggtgtcc tttgagattt 2701 gaaggtcctc caggaccagt ggggacacct ctgcggtttg agggcccaat tggtcaagca 2761 ggaggaggtg gttttcggtt tgaaggttcc cctggtctga ggtttgaggg atctccaggt 2821 ggtttgagat ttgagggacc aggaggccag cctgtgggtg gtctgaggtt tgagggacat 2881 cgtggtcaac ctgtgggtgg tctaaggttt gagggacctc atggtcagcc tgtgggtgga 2941 cttagatttg ataatccccg aggtcagcct gtaggtggac ttagatttga ggggggtcat 3001 ggtccatcag gggctgcgat taggtttgat ggacctcatg gtcagccagg aggtggaatc 3061 agatttgagg gccctttgct acagcaaggg gttggaatga ggtttgaggg cccccatggt 3121 cagtcagtag ctggtctgag atttgaggga caacataatc aacttggtgg gaaccttagg 3181 tttgagggtc cacatggtca gccaggggtt ggtatcaggt ttgaaggccc tttagtccaa 3241 caaggaggtg gaatgaggtt tgagggtcct tctgtaccag gaggtggcct gagaattgaa 3301 gggcctctgg gtcaaggtgg tccaagattt gaaggttgtc atgctttaag gtttgatggg 3361 cagccaggtc agccgtcact cttgccaaga tttgatggat tacatggtca gccaggtcct 3421 agatttgaaa ggactcctgg tcagccaggc cctcagaggt ttgatggacc acctggacag 3481 caggttcaac ccagatttga cggtgtacct caaagatttg atggtccaca acatcagcaa 3541 gcatcaaggt ttgatattcc tcttggtctt caaggcacaa gatttgacaa tcatccttca 3601 caaaggcttg aatcagtatc tttcaatcag actggtccat ataatgatcc acctggcaat 3661 gcttttaatg ccccatccca aggactacag ttccaaagac atgaacaaat atttgattca 3721 cctcaaggac caaattttaa tggaccacat ggccctggaa accagagttt ctctaatcca 3781 cttaacagag cttctggaca ctattttgat gaaaaaaatc ttcagagttc tcaatttgga 3841 aactttggca atatacctgc tccaatgaca gtaggaaata ttcaggcatc tcaacaggtt 3901 ctgagtggtg ttgctcagcc agtagctttt ggtcaaggac aacagttttt accagttcat 3961 ccacaaaatc ctggatttgt tcagaatcct tcaggagccc tccctaaggc atatcctgat 4021 aatcatctca gtcaggtgga tgtaaatgaa ttgttttcaa aattgctaaa aacaggaatt 4081 ctcaaattgt cccaaactga ttcagctaca acacaagtaa gtgaagtaac tgctcagcct 4141 ccccctgaag aggaggaaga tcaaaatgaa gatcaagatg ttccagatct tactaatttt 4201 acagttgaag aattgaaaca acgttatgac agtgttataa atcgactgta cactggtatt 4261 cagtgttact cttgtggaat gaggtttaca acatcacaga cagatgttta tgcagatcat 4321 ttggactggc attatcggca aaatagaact gaaaaggatg ttagccgaaa agtcactcat 4381 agacgttggt actacagttt aacagactgg atagaatttg aggagatagc tgatctggaa 4441 gaacgggcaa agagccagtt ttttgaaaag gtgcatgaag aagttgtgct caaaactcaa 4501 gaggctgcta aagaaaaaga gttccaaagt gtacctgctg gaccagctgg agcagttgag 4561 agttgtgaaa tctgtcaaga acaatttgaa caatactggg atgaagaaga ggaggaatgg 4621 catttgaaaa atgctattag agtagatgga aagatttatc atccatcatg ttatgaagat 4681 tatcaaaata catcttcatt tgattgtaca ccatctccca gcaagacacc agttgaaaac 4741 cccttgaata ttatgttgaa cattgtcaaa aacgaattgc aggaaccctg tgacagtccc 4801 aaagttaagg aagaacgaat tgatacacca ccagcttgta cagaggaaag catagcaaca 4861 ccctctgaaa ttaaaacaga aaatgacaca gtcgagtcag tttaaataaa atgagaaagg 4921 tatgtttttc ttttttaaaa aagctgctgt tggatctaga aggtgaagaa tttttttatg 4981 tatatataga catatctata taaattgtct ggctgaggca gggccttcag ctatcatttg 5041 gttaataaat acattttagt atttgcattt cctactgcct gcagagtttc aggtgcttgt 5101 tgtgtgaaag ttctgtagat gtgtgcaaat ttaacgaaat gaaattgtat gtgtaaaaat 5161 gtacgatttt tcactgtgca actgtaaatt ataaataaaa aatatttttg ctattcatgg 5221 agtgtaatat ttatgcacac catcaaatag tttctgtact ttttattggg taaaaatgga 5281 attgaacagc aacctcaaca taagattttt tttctagtag cctcccactg attaaagaag 5341 caagtttgag gtttcatcct tcaaaagggg gttccgagag agcaccgtag ggcttttctc 5401 aaatagaaaa gccagatttt gaaaaaattt taaagataaa ataggacata ttttgcagat 5461 atatatatat atatacacaa acacatctcc aggtatagag aaccatccag atgttcactt 5521 ttgaaaatat ctaatgatgc aaagttttat tcttgaactt ggacactgat gccatcaaac 5581 aattaacaaa tatatttaag tactaaaggt gatttttttt ttaaagactt tttcaaattg 5641 tcaaatgatt taatgcagat gaacatattt ctattttaag taacgggaat ctgtaagaat 5701 gtttgcttga gatatggtta acttttttct tttgttggtt ttgacttaga tggacaccat 5761 gagatgttaa tattcataca tgtaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa 5821 aaaaaaaaaa aaaaaaaaaa aaaa //