LOCUS BC065272 1879 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens vang-like 1 (van gogh, Drosophila), mRNA (cDNA clone
MGC:70584 IMAGE:6165098), complete cds.
ACCESSION BC065272
VERSION BC065272.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1879)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1879)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (12-JAN-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 140 Row: n Column: 5
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 20373170.
FEATURES Location/Qualifiers
source 1..1879
/db_xref="H-InvDB:HIT000261835"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:70584 IMAGE:6165098"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_72"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1879
/gene="VANGL1"
/gene_synonym="LPP2"
/gene_synonym="MGC5338"
/gene_synonym="STB2"
/db_xref="GeneID:81839"
/db_xref="HGNC:HGNC:15512"
/db_xref="MIM:610132"
CDS 249..1823
/gene="VANGL1"
/gene_synonym="LPP2"
/gene_synonym="MGC5338"
/gene_synonym="STB2"
/codon_start=1
/product="vang-like 1 (van gogh, Drosophila)"
/protein_id="AAH65272.1"
/db_xref="GeneID:81839"
/db_xref="HGNC:HGNC:15512"
/db_xref="MIM:610132"
/translation="MDTESTYSGYSYYSSHSKKSHRQGERTRERHKSPRNKDGRGSEK
SVTIQPPTGEPLLGNDSTRTEEVQDDNWGETTTAITGTSEHSISQEDIARISKDMEDS
VGLDCKRYLGLTVASFLGLLVFLTPIAFILLPPILWRDELEPCGTICEGLFISMAFKL
LILLIGTWALFFRKRRADMPRVFVFRALLLVLIFLFVVSYWLFYGVRILDSRDRNYQG
IVQYAVSLVDALLFIHYLAIVLLELRQLQPMFTLQVVRSTDGESRFYSLGHLSIQRAA
LVVLENYYKDFTIYNPNLLTASKFRAAKHMAGLKVYNVDGPSNNATGQSRAMIAAAAR
RRDSSHNELYYEEAEHERRVKKRKARLVVAVEEAFIHIQRLQAEEQQKAPGEVMDPRE
AAQAIFPSMARALQKYLRITRQQNYHSMESILQHLAFCITNGMTPKAFLERYLSAGPT
LQYDKDRWLSTQWRLVSDEAVTNGLRDGIVFVLKCLDFSLVVNVKKIPFIILSEEFID
PKSHKFVLRLQSETSV"
BASE COUNT 456 a 512 c 479 g 432 t
ORIGIN
1 gcggcggcgg cggcggggct ctgcctctcc aggagcccag cgcaggccgc agagccgggg
61 ccgctgtgag ccgagaccgc gggccgcgga gctcgggcgg ccggcgcgga gaatttgttc
121 ctgttgaaga gtggctcctc ttctaatttc cagactcctt gaggttttag gagtctggta
181 ggtgaaattt tctacctcta aggagaaaca gtacctgctc cttcctcaag cgcaagccct
241 ccattgctat ggataccgaa tccacttatt ctggatattc ttactattca agtcattcga
301 aaaaatctca cagacaaggg gaaagaacta gagagagaca caagtcaccc cggaataaag
361 acggcagagg gtcagaaaag tctgtcacca ttcaacctcc cactggagag cccctgttgg
421 gaaatgattc tactcggaca gaggaagttc aggatgacaa ctggggagag accaccacgg
481 ccatcacagg cacctcggag cacagcatat cccaagagga cattgccagg atcagcaagg
541 acatggagga cagcgtgggg ctggattgca aacgctacct gggcctcacc gtcgcctctt
601 ttcttggact tctagttttc ctcaccccta ttgccttcat ccttttacct ccgatcctgt
661 ggagggatga gctggagcct tgtggcacaa tttgtgaggg gctctttatc tccatggcat
721 tcaaactcct cattctgctc atagggacct gggcactttt tttccgcaag cggagagctg
781 acatgccacg ggtgtttgtg tttcgtgccc ttttgttggt cctcatcttt ctctttgtgg
841 tttcctattg gcttttttac ggggtccgca ttttggactc tcgggaccgg aattaccagg
901 gcattgtgca atatgcagtc tcccttgtgg atgccctcct cttcatccat tacctggcca
961 tcgtcctgct ggagctcagg cagctgcagc ccatgttcac gctgcaggtg gtccgctcca
1021 ccgatggcga gtcccgcttc tacagcctgg gacacctgag tatccagcga gcagcattgg
1081 tggtcctaga aaattactac aaagatttca ccatctataa cccaaacctc ctaacagcct
1141 ccaaattccg agcagccaag catatggccg ggctgaaagt ctacaatgta gatggcccca
1201 gtaacaatgc cactggccag tcccgggcca tgattgctgc agctgctcgg cgcagggact
1261 caagccacaa cgagttgtat tatgaagagg ccgaacatga acggcgagta aagaagcgga
1321 aagcaaggct ggtggttgca gtggaagagg ccttcatcca cattcagcgt ctccaggctg
1381 aggagcagca gaaagcccca ggggaggtga tggaccctag ggaggccgcc caggccattt
1441 tcccctccat ggccagggct ctccagaagt acctgcgcat cacccggcag cagaactacc
1501 acagcatgga gagcatcctg cagcacctgg ccttctgcat caccaacggc atgaccccca
1561 aggccttcct agaacggtac ctcagtgcgg gccccaccct gcaatatgac aaggaccgct
1621 ggctctctac acagtggagg cttgtcagtg atgaggctgt gactaatgga ttacgggatg
1681 gaattgtgtt cgtccttaag tgcttggact tcagcctcgt agtcaatgtg aagaaaattc
1741 cattcatcat actctctgaa gagttcatag accccaaatc tcacaaattt gtccttcgct
1801 tacagtctga gacatccgtt taaaagttct atatttgtgg ctttattaaa aaaaaaaaaa
1861 aaaaaaaaaa aaaaaaaaa
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