LOCUS BC065253 2539 bp mRNA linear HUM 28-JUL-2005
DEFINITION Homo sapiens SWI/SNF related, matrix associated, actin dependent
regulator of chromatin, subfamily c, member 1, mRNA (cDNA clone
IMAGE:6139607), partial cds.
ACCESSION BC065253
VERSION BC065253.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2539)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2539)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (12-JAN-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 140 Row: h Column: 11
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 21237801.
FEATURES Location/Qualifiers
source 1..2539
/db_xref="H-InvDB:HIT000261816"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:6139607"
/tissue_type="Eye, retinoblastoma"
/clone_lib="NIH_MGC_67"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..>2539
/gene="SMARCC1"
/gene_synonym="BAF155"
/gene_synonym="CRACC1"
/gene_synonym="Rsc8"
/gene_synonym="SRG3"
/gene_synonym="SWI3"
/db_xref="GeneID:6599"
/db_xref="MIM:601732"
CDS 88..>2539
/gene="SMARCC1"
/gene_synonym="BAF155"
/gene_synonym="CRACC1"
/gene_synonym="Rsc8"
/gene_synonym="SRG3"
/gene_synonym="SWI3"
/codon_start=1
/product="SMARCC1 protein"
/protein_id="AAH65253.1"
/db_xref="GeneID:6599"
/db_xref="MIM:601732"
/translation="MAAAAGGGGPGTAVGATGSGIAAAAAGLAVYRRKDGGPATKFWE
SPETVSQLDSVRVWLGKHYKKYVHADAPTNKTLAGLVVQLLQFQEDAFGKHVTNPAFT
KLPAKCFMDFKAGGALCHILGAAYKYKNEQGWRRFDLQNPSRMDRNVEMFMNIEKTLV
QNNCLTRPNIYLIPDIDLKLANKLKDIIKRHQGTFTDEKSKASHHIYPYSSSQDDEEW
LRPVMRKEKQVLVHWGFYPDSYDTWVHSNDVDAEIEDPPIPEKPWKVHVKWILDTDIF
NEWMNEEDYEVDENRKPVSFRQRISTKNEEPVRSPERRDRKASANARKRKHSPSPPPP
TPTESRKKSGKKGQASLYGKRRSQKEEDEQEDLTKDMEDPTPVPNIEEVVLPKNVNLK
KDSENTPVKGGTVADLDEQDEETVTAGGKEDEDPAKGDQSRSVDLGEDNVTEQTNHII
IPSYASWFDYNCIHVIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTS
TACRRNLTGDVCAVMRVHAFLEQWGLVNYQVDPESRPMAMGPPPTPHFNVLADTPSGL
VPLHLRSPQVPAAQQMLNFPEKNKEKPVDLQNFGLRTDIYSKKTLAKSKGASAGREWT
EQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLENSDASLGPLA
YQPVPFSQSGNPVMSTVAFLASVVDPRVASAAAKAALEEFSRVREEVPLELVEAHVKK
VQEAARASGKVDPTYGLESSCIAGTGPDEPEKLEGAEEEKMEADPDGQQPEKAENKVE
NETDEGDKAQDGENEKKKK"
BASE COUNT 764 a 528 c 688 g 559 t
ORIGIN
1 gacgcgcgcg ggggtgcgcg cgggaacgac cgggaaacac cgcgagggcc ggggtgggcc
61 aggctgtggg gacgacgggc tgcgacgatg gccgcagcgg cgggcggcgg cgggccgggg
121 acagcggtag gcgccacggg ctcggggatt gcggcggcag ccgcaggcct agctgtttat
181 cgacggaagg atgggggccc ggccaccaag ttttgggaga gcccggagac ggtgtcccag
241 ctggattcgg tgcgggtctg gctgggcaag cactacaaga agtatgttca tgcggatgct
301 cctaccaata aaacactggc tgggctggtg gtgcagcttc ttcagttcca ggaagatgcc
361 tttgggaagc atgtcaccaa cccggccttc accaaactcc ctgcaaagtg tttcatggat
421 ttcaaagctg gaggcgcctt atgtcacatt cttggggctg cttacaagta taaaaatgaa
481 cagggatggc ggaggtttga cctacagaac ccatctcgaa tggatcgtaa tgtggaaatg
541 tttatgaaca ttgaaaaaac attggtgcag aacaattgtt tgaccagacc caacatctac
601 ctcattccag acattgatct gaagttggct aacaaattga aagatatcat caaacgacat
661 cagggaacat ttacggatga gaagtcaaaa gcttcccacc acatttaccc atattcttcc
721 tcacaagacg atgaagaatg gttgagaccg gtgatgagaa aagagaagca agtgttagtg
781 cattggggct tttacccaga cagctatgat acttgggtcc atagtaatga tgttgatgct
841 gaaattgaag atccaccaat tccagaaaaa ccatggaagg ttcatgtgaa atggattttg
901 gacactgata ttttcaatga atggatgaat gaggaggatt atgaggtgga tgaaaatagg
961 aagcctgtga gttttcgtca gcggatttca accaagaatg aagagccagt cagaagtcca
1021 gaaagaagag atagaaaagc atcagctaat gctcgaaaga ggaaacattc gccttcgcct
1081 ccccctccga caccaacaga atcacggaag aagagtggga agaaaggcca agctagcctt
1141 tatgggaagc gcagaagtca gaaagaggaa gatgagcaag aagatctaac caaggatatg
1201 gaagacccaa cacctgtacc caatatagaa gaagtagtac ttcccaaaaa tgtgaaccta
1261 aagaaagata gtgaaaatac acctgttaaa ggaggaactg tagcggatct agatgagcag
1321 gatgaagaaa cagtcacagc aggaggaaag gaagatgaag atcctgccaa aggtgatcag
1381 agtcgatcag ttgaccttgg ggaagataat gtgacagagc agaccaatca cattattatt
1441 cctagttatg catcatggtt tgattataac tgtattcatg tgattgaacg gcgtgctctt
1501 cctgagttct tcaatggaaa aaacaaatcc aagactccag aaatatactt ggcatatcga
1561 aattttatga ttgacacgta tcgtctaaac ccccaagagt atttaactag cactgcttgt
1621 cggaggaact tgactggaga tgtgtgtgct gtgatgaggg tccatgcctt tttagagcag
1681 tggggactcg ttaattacca agttgacccg gaaagtagac ccatggcaat gggacctcct
1741 cctactcctc attttaatgt attagctgat accccctctg ggcttgtgcc tctgcatctt
1801 cgatcacctc aggttcctgc tgctcaacag atgctaaatt ttcctgagaa aaacaaggaa
1861 aaaccagttg atttgcagaa ctttggtctc cgtactgaca tttactccaa gaaaacatta
1921 gcaaagagta aaggtgctag tgctggaaga gaatggactg aacaggagac ccttctactc
1981 ctggaggccc tggagatgta caaggatgat tggaacaaag tgtcggaaca tgttggaagt
2041 cgtactcagg atgaatgcat cctccacttt ttgagacttc ccattgagga cccatacctt
2101 gagaattcag atgcttccct tgggcctttg gcctaccagc ctgtcccctt cagtcagtca
2161 ggaaatccag ttatgagtac tgttgctttt ttggcatctg tggtggaccc tcgcgtggca
2221 tctgctgcag caaaagcggc tttggaggag ttttctcggg tccgggagga ggtaccactg
2281 gaattggttg aagctcatgt caagaaagta caagaagcag cacgagcctc tgggaaagtg
2341 gatcccacct acggtctgga gagcagctgc attgcaggca cagggcccga tgagccagag
2401 aagcttgaag gagctgaaga ggaaaaaatg gaagccgacc ctgatggtca gcagcctgaa
2461 aaggcagaaa ataaagtgga aaatgaaacg gatgaaggtg ataaagcaca agatggagaa
2521 aatgaaaaaa aaaaaaaaa
//