LOCUS BC065223 4350 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens histocompatibility (minor) HA-1, mRNA (cDNA clone
MGC:75327 IMAGE:5751491), complete cds.
ACCESSION BC065223
VERSION BC065223.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4350)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 4350)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (12-JAN-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 139 Row: m Column: 11
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 47834347.
FEATURES Location/Qualifiers
source 1..4350
/db_xref="H-InvDB:HIT000261786"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:75327 IMAGE:5751491"
/tissue_type="Brain, Lung, Testis, adult, pooled whole"
/clone_lib="NIH_MGC_115"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..4350
/gene="HMHA1"
/gene_synonym="HA-1"
/gene_synonym="HLA-HA1"
/gene_synonym="KIAA0223"
/db_xref="GeneID:23526"
/db_xref="HGNC:HGNC:17102"
/db_xref="MIM:601155"
CDS 233..3643
/gene="HMHA1"
/gene_synonym="HA-1"
/gene_synonym="HLA-HA1"
/gene_synonym="KIAA0223"
/codon_start=1
/product="histocompatibility (minor) HA-1"
/protein_id="AAH65223.1"
/db_xref="GeneID:23526"
/db_xref="HGNC:HGNC:17102"
/db_xref="MIM:601155"
/translation="MFSRKKRELMKTPSISKKNRAGSPSPQPSGELPRKDGADAVFPG
PSLEPPAGSSGVKATGTLKRPTSLSRHASAAGFPLSGAASWTLGRSHRSPLTAASPGE
LPTEGAGPDVVEDISHLLADVARFAEGLEKLKECVLHDDLLEARRPRAHECLGEALRV
MHQIISKYPLLNTVETLTAAGTLIAKVKAFHYESNNDLEKQEFEKALETIAVAFSSTV
SEFLMGEVDSSTLLAVPPGDSSQSMESLYGPGSEGTPPSLDDCDAGCLPAEEVDVLLQ
RCEGGVDAALLYAKNMAKYMKDLISYLEKRTTLEMEFAKGLQKIAHNCRQSVMQEPHM
PLLSIYSLALEQDLEFGHSMVQAVGTLQTQTFMQPLTLRRLEHEKRRKEIKEAWHRAQ
RKLQEAESNLRKAKQGYVQRCEDHDKARFLVAKAEEEQAGSAPGAGGTATKTLDKRRR
LEEEAKNKAEEAMATYRTCVADAKTQKQELEDTKVTALRQIQEVIRQSDQTIKSATIS
YYQMMHMQTAPLPVHFQMLCESSKLYDPGQQYASHVRQLQRDQEPDVHYDFEPHVSAN
AWSPVMRARKSSFNVSDVARPEAAGSPPEEGGCTEGTPAKDHRAGRGHQVHKSWPLSI
SDSDSGLDPGPGAGDFKKFERTSSSGTMSSTEELVDPDGGAGASAFEQADLNGMTPEL
PVAVPSGPFRHEGLSKAARTHRLRKLRTPAKCRECNSYVYFQGAECEECCLACHKKCL
ETLAIQCGHKKLQGRLQLFGQDFSHAARSAPDGVPFIVKKCVCEIERRALRTKGIYRV
NGVKTRVEKLCQAFENGKELVELSQASPHDISNVLKLYLRQLPEPLISFRLYHELVGL
AKDSLKAEAEAKAASRGRQDGSESEAVAVALAGRLRELLRDLPPENRASLQYLLRHLR
RIVEVEQDNKMTPGNLGIVFGPTLLRPRPTEATVSLSSLVDYPHQARVIETLIVHYGL
VFEEEPEETPGGQDESSNQRAEVVVQVPYLEAGEAVVYPLQEAAADGCRESRVVSNDS
DSDLEEASELLSSSEASALGHLSFLEQQQSEASLEVASGSHSGSEEQLEATAREDGDG
DEDGPAQQLSGFNTNQSNNVLQAPLPPMRLRGGRMTLGSCRERQPEFV"
BASE COUNT 889 a 1368 c 1443 g 650 t
ORIGIN
1 gagccgcagg ctgaggccgg gaagggtcgg gggcgaggcc gcgtcgccgc ctccccgaag
61 ccttttcctg ttggggggga gggcccgcca gtgacggccg ggcctgtcac gtgggcctga
121 cagctgggga gggggtggcc ggcgacaatg tggtcccgaa gcggccagcg ccgggagctg
181 cagcgctgag acccccagcc cgccccctcg ggctcccggc cggggcccca tcatgttctc
241 caggaagaaa cgagagctca tgaaaacccc ttccatctcg aaaaagaacc gcgcgggaag
301 ccccagcccg cagccctcgg gggagctgcc caggaaggat ggggctgacg cggtgttccc
361 cggaccaagc ctggagccgc ccgctgggtc ctccggcgtc aaggccacag ggaccctcaa
421 gcggcccacc agcctgagcc gccacgccag cgcggctggc ttccccctgt cgggtgctgc
481 ctcctggaca ctgggccgga gccaccggag cccactgaca gccgccagcc cgggcgagct
541 gcccaccgag ggtgccggcc cggacgtcgt cgaggacatc tcccatctgc tggcggacgt
601 ggcccgcttc gctgagggcc ttgagaaact taaggagtgt gtgctgcatg acgacctcct
661 tgaggcccgc cgcccgcggg cccacgagtg cctgggtgag gctctgcgtg tcatgcatca
721 gatcatctcc aagtacccgc tgctgaacac cgtggagacg ctcaccgcag ccggcaccct
781 cattgccaag gtcaaagcct tccattatga gagcaacaat gatctggaga aacaggagtt
841 cgagaaggcc ctggagacga ttgctgtggc cttcagtagc acagtgtccg agttcctcat
901 gggtgaagtg gacagcagca ccctcctagc agtgcctcct ggggactcga gccagtccat
961 ggaaagcctg tatggaccgg gcagtgaggg cacgcctccc agcctggatg actgtgacgc
1021 cggctgcctg cccgccgagg aggtggacgt gctgctacag cgctgtgagg ggggcgtgga
1081 tgccgcactg ctgtatgcca agaacatggc caagtacatg aaggacctca tcagctacct
1141 ggagaagcgg acgacgctgg agatggagtt tgccaagggc ctgcagaaga tcgctcacaa
1201 ctgcagacag agcgtcatgc aggagcccca catgccgctc ctgtccatct actcgctggc
1261 cctggagcag gacctggagt tcggccacag catggtgcag gcggtgggca ccttgcagac
1321 ccagaccttc atgcagcccc tgaccctgcg gcggcttgaa cacgagaagc gcaggaagga
1381 gatcaaggag gcctggcacc gtgcccagag gaagctgcaa gaggcggagt ccaacctgcg
1441 caaggccaag cagggttacg tgcagcgctg cgaggaccac gacaaggctc gcttcctcgt
1501 ggccaaggcg gaggaggagc aggctggcag cgcgccggga gcaggcggca cggccaccaa
1561 gaccctggac aagcggcggc ggctggagga ggaggccaag aacaaggcgg aggaagctat
1621 ggccacctac cgcacctgcg tggccgacgc gaagacgcag aagcaggagc tggaggatac
1681 caaggtgacg gcgctgcggc agatccagga ggtcatccgg cagagcgacc aaaccatcaa
1741 gtcggccacg atctcctact accagatgat gcatatgcag acggcgccgc tgcccgtgca
1801 cttccagatg ctgtgtgaga gcagcaagct gtatgaccca ggccagcagt acgcctccca
1861 cgtgcgccag ctgcagcggg accaggagcc cgatgtgcac tacgactttg agccccacgt
1921 ctccgccaac gcctggtccc ccgtcatgcg tgcccggaag agcagcttca acgtgagtga
1981 tgtggcgcgg cccgaggctg ccgggagccc cccagaagaa ggcgggtgca ctgagggcac
2041 acctgccaag gaccacaggg ccgggcgagg acaccaggtt cacaagtcat ggccgctctc
2101 gatctcagac tcggacagtg ggctggaccc cggccctggc gcaggggact ttaagaagtt
2161 cgagcggacg tcatccagtg gtaccatgtc gtccacggag gagctggtgg acccagacgg
2221 tggagccggg gcttcagcct ttgagcaggc tgacctcaac ggcatgaccc ccgagctgcc
2281 ggtggccgtg cccagtggac cgttccgcca cgaggggctg tccaaggcgg cccgtactca
2341 ccggctccgg aagctccgca cgcccgccaa gtgccgcgag tgcaacagct acgtctactt
2401 ccagggtgct gagtgtgaag agtgctgcct ggcctgccac aagaaatgtc tggagacgct
2461 ggccatacag tgcgggcaca agaagctgca gggccgcctg cagctgttcg gccaggactt
2521 cagccacgcg gcccgcagcg cccccgacgg cgtgcccttc atcgtcaaga agtgcgtctg
2581 cgagatcgag cggcgggcgc tgcgcaccaa gggcatctac cgggtcaatg gggtaaagac
2641 acgcgtggag aagctgtgcc aggccttcga gaacggcaag gagctggtcg agctgtcgca
2701 ggcctcgccc cacgacatca gcaacgtcct caagctctac ctgcgtcagc ttcccgagcc
2761 gctcatctcc ttccgcctct accacgagct cgtagggctg gccaaggaca gcctgaaggc
2821 agaggccgag gccaaggcgg cgtcccgggg ccggcaggac ggctcggaga gcgaggcagt
2881 ggcggtggcc ctggcaggtc ggctgcggga gctcctgcgg gacctgccgc ctgagaaccg
2941 ggcctcgctg cagtacctgc tgcgtcacct acgcaggatc gtggaggtgg agcaggacaa
3001 caagatgacc cccgggaacc tgggcatcgt gttcgggccc acgctgcttc ggccacggcc
3061 caccgaggcc accgtgtccc tctcctccct ggtggattat ccccatcagg cccgcgtcat
3121 cgagactctc atcgtccact acggcctggt cttcgaggag gagccggagg agacccccgg
3181 gggccaggac gagtcatcca accagcgagc tgaggtagtc gtccaggtgc cgtacctgga
3241 ggcgggcgag gcggtggtct acccgctgca ggaggcggcg gcggacgggt gcagagaatc
3301 ccgagttgtg tccaacgatt cggactcgga cctagaggag gcctccgagc tgctgtcctc
3361 atcggaggcc agtgccctgg gccacctcag cttcctggag cagcagcaga gcgaggccag
3421 cctagaggtg gcttctggca gccacagcgg cagtgaggag cagctggagg ccacagcccg
3481 ggaggacggg gacggggacg aggacggccc ggcccagcag ctctcaggat tcaacaccaa
3541 ccagtccaac aacgtgctgc aggccccact gccccccatg aggctccgtg gcgggcggat
3601 gacactgggc tcctgcaggg aaaggcagcc ggaattcgtg tgagctgggg tggggctggg
3661 accacaggtg gcttctctct tgcctgctcc tgtccctcca gcacgtcccc tgcaccacgg
3721 catagcttag gtgcgccgtc ctggggtcgc tgccgagagc gcctggactt cgacgtccca
3781 ccagcgggcg cctcctccca gaggcttcca ggagcacgag ggccttgcgg cacaggactg
3841 tgccctgtgc tgtcccctgc accccggctc agctgagctg gggaacactg ctgtcgtgtg
3901 aagtcacagt ggccttgttg gtgcccacag ggctgtgtgg atggaggaag ctgtccctgc
3961 ccagtgcatc ccccaggtca tcacggggac gcaggaggca ggccctgccc tgccctctcc
4021 tcacaggtct gttgcaggga ctccagaaac cattctggga gccgtggatg ggggcggagc
4081 tggggtttgg tgcagtttcc agggtgcagt acagcagggc ctgaatactg gccctggact
4141 cccttttcca gaacaccagg tgtggccacc tggggctcag gtacacagtg gggtctctcg
4201 gaagccaccg tgtggttctt tcacaggcac gtttattttg ctgaaataaa aagtttttaa
4261 tcgggaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
4321 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
//