LOCUS BC065004 1430 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens coiled-coil domain containing 50, mRNA (cDNA clone
MGC:70346 IMAGE:6049272), complete cds.
ACCESSION BC065004
VERSION BC065004.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1430)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 1430)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-JAN-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC/DCTD/DTP
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 140 Row: e Column: 5
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 33186926.
FEATURES Location/Qualifiers
source 1..1430
/db_xref="H-InvDB:HIT000261708"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:70346 IMAGE:6049272"
/tissue_type="Skin, melanotic melanoma."
/clone_lib="NIH_MGC_72"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..1430
/gene="CCDC50"
/gene_synonym="YMER"
/db_xref="GeneID:152137"
/db_xref="HGNC:HGNC:18111"
CDS 88..1008
/gene="CCDC50"
/gene_synonym="YMER"
/codon_start=1
/product="coiled-coil domain containing 50"
/protein_id="AAH65004.1"
/db_xref="GeneID:152137"
/db_xref="HGNC:HGNC:18111"
/translation="MAEVSIDQSKLPGVKEVCRDFAVLEDHTLAHSLQEQEIEHHLAS
NVQRNRLVQHDLQVAKQLQEEDLKAQAQLQKRYKDLEQQDCEIAQEIQEKLAIEAERR
RIQEKKDEDIARLLQEKELQEEKKRKKHFPEFPATRAYADSYYYEDGGMKPRVMKEAV
STPSRMAHRDQEWYDAEIARKLQEEELLATQVDMRAAQVAQDEEIARLLMAEEKKAYK
KAKEREKSSLDKRKQDPEWKPKTAKAANSKSKESDEPHHSKNERPARPPPPIMTDGED
ADYTHFTNQQSSTRHFSKSESSHKGFHYKH"
BASE COUNT 474 a 293 c 339 g 324 t
ORIGIN
1 gcgctgctgc tgcgctcggg gccccgctcg gcgccggcgg tgaccgggaa gcccgcgtta
61 aaggggcaac cgggaccctg gcccggtatg gctgaagtca gcatcgacca gtccaagctg
121 cctggagtca aggaagtatg ccgagatttt gctgtcctgg aggaccacac cctggctcac
181 agcctgcagg aacaagagat tgagcatcat ttggcatcga acgttcagcg gaaccgtttg
241 gtccagcatg atctccaggt ggctaagcag ctccaagagg aagatctgaa agcgcaggcc
301 cagctccaga agcgctacaa agaccttgaa caacaagact gtgaaattgc tcaggaaatt
361 caggagaagc tggctattga ggcagagaga cgacgcattc aggagaagaa ggatgaggac
421 atagctcgcc ttttgcaaga aaaggagtta caggaagaga aaaagagaaa gaaacacttt
481 ccagagttcc ctgcaacccg tgcttatgca gatagttact attatgaaga tggaggaatg
541 aagccaagag tgatgaaaga agctgtatct actccatcac gaatggccca cagggatcag
601 gaatggtatg atgctgaaat tgccagaaaa ctgcaagaag aagaactttt ggctacccag
661 gtggacatga gagccgctca agtagctcaa gatgaagaaa tcgctcgact tctaatggct
721 gaagaaaaga aagcttacaa aaaagccaag gagcgggaga aatcatcttt ggacaaaaga
781 aagcaagacc ccgagtggaa gccaaaaaca gctaaagcag caaattccaa gtcaaaagag
841 agtgatgaac ctcaccattc taagaatgaa aggccagcac ggccaccacc acctatcatg
901 acagatggtg aagatgcgga ttacactcat tttacaaacc agcagagttc cacacggcat
961 ttctcaaaat cagagtcctc tcataaaggt tttcattaca aacattaaaa acctaggaat
1021 ctgccttgaa aatggactca ctatagcaaa tattactggg tgatacagaa tgaattctac
1081 acttactttt tttctcctgt gtttgcattc ctgggattta tcctcaagtg catttctgac
1141 cataagtaat tttaattcat ttcaaatgtt ttggttattc atgatcactt gggcagtata
1201 agaaaatgta gcttctgaat attggccacc tctatgctgc atatacttct tgggatatag
1261 tatctaagac ctttgtaaac tgccattttg ttaggtatgg agtttggtat ctagggagta
1321 ggccttattt agcaattcaa attttatgga gatgaatgat caaagtgaaa caatgtttgg
1381 atgcaacgca gaataaaaga atataagaaa taaaaaaaaa aaaaaaaaaa
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