LOCUS BC064990 3882 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens splicing factor, arginine/serine-rich 15, mRNA (cDNA
clone MGC:71275 IMAGE:5432277), complete cds.
ACCESSION BC064990
VERSION BC064990.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3882)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 3882)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (02-JAN-2004) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Rubin Laboratory
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAL Plate: 50 Row: g Column: 24
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 40789228.
FEATURES Location/Qualifiers
source 1..3882
/db_xref="H-InvDB:HIT000261696"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:71275 IMAGE:5432277"
/tissue_type="Brain, astrocytoma, grade IV"
/clone_lib="NIH_MGC_98"
/lab_host="DH10B"
/note="Vector: pOTB7"
gene 1..3882
/gene="SFRS15"
/gene_synonym="DKFZP434E098"
/gene_synonym="KIAA1172"
/gene_synonym="SRA4"
/db_xref="GeneID:57466"
/db_xref="HGNC:HGNC:19304"
CDS 258..3701
/gene="SFRS15"
/gene_synonym="DKFZP434E098"
/gene_synonym="KIAA1172"
/gene_synonym="SRA4"
/codon_start=1
/product="splicing factor, arginine/serine-rich 15"
/protein_id="AAH64990.1"
/db_xref="GeneID:57466"
/db_xref="HGNC:HGNC:19304"
/translation="MDAVNAFNQELFSLMDMKPPISRAKMILITKAAIKAIKLYKHVV
QIVEKFIKKCKPEYKVPGLYVIDSIVRQSRHQFGTDKDVFGPRFSKNITATFQYLYLC
PSEDKSKIVRVLNLWQKNGVFKIEIIQPLLDMAAGTSNAAPVAENVTNNEGSPPPPVK
VSSEPPTQATPNSVPAVPQLPSSDAFAAVAQLFQTTQGQQLQQILQTFQQPPKPQSPA
LDNAVMAQVQAITAQLKTTPTQPSEQKAAFPPPEQKTAFDKKLLDRFDYDDEPEAVEE
SKKEDTTAVTTTAPAAAVPPAPTATVPAAAAPAAASPPPPQAPFGFPGDGMQQPAYTQ
HQNMDQFQPRMMGIQQDPMHHQVPLPPNGQMPGFGLLPTPPFPPMAQPVIPPTPPVQQ
PFQASFQAQNEPLTQKPHQQEMEVEQPCIQEVKRHMSDNRKSRSRSASRSPKRRRSRS
GSRSRRSRHRRSRSRSRDRRRHSPRSRSQERRDREKERERRQKGLPQVKPETASVCST
TLWVGQLDKRTTQQDVASLLEEFGPIESINMIPPRGCAYIVMVHRQDAYRALQKLSRG
NYKVNQKSIKIAWALNKGIKADYKQYWDVELGVTYIPWDKVKPEELESFCEGGMLDSD
TLNPDWKGIPKKPENEVAQNGGAETSHTEPVSPIPKPLPVPVPPIPVPAPITVPPPQV
PPHQPGPPVVGALQPPAFTPPLGIPPPGFGPGVPPPPPPPPFLRPGFNPMHLPPGFLP
PGPPPPITPPVSIPPPHTPPISIPNSTIAGINEDTTKDLSIGNPIPTVVSGARGNAES
GDSVKMYGSAVPPAAPTNLPTPPVTQPVSLLGTQGVAPGPVIGLQAPSTGLLGARPGL
IPLQRPPGMPPPHLQRFPLMPPRPMPPHMMHRGPPPGPGGFAMPPPHGMKGPFPPHGP
FVRPGGMPGLGGPGPGPGGPEDRDGRQQPPQQPQQQPQPQAPQQPQQQQQQQPPPSQQ
PPPTQQQPQQFRNDNRQQFNSGRDQERFGRRSFGNRVENDRERYGNRNDDRDNSNRDR
REWGRRSPDRDRHRDLEERNRRSSGHRDRERDSRDRESRREKEEARGKEKPEVTDRAG
GNKTVEPPISQVGNVDTASELEKGVSEAAVLKPSEELPAEATSSVEPEKDSGSAAEAP
R"
BASE COUNT 1052 a 1098 c 895 g 837 t
ORIGIN
1 tgaagaccag cgctgccgcc gcctcctttt cctcatcctg cgaacgggac tgagaggggg
61 cccgccacct ctccgcctct gcctcggccg cccgcctcgc cgcttcgggc gcagcctctt
121 cctgcccggg cctcggactc cgccgctcgt cgcctccccc cggccaccag gcccggctgg
181 tttcccagcc ccgctccgcc gcggcgcgag gtctatgtga ccggcgggcc cggagcagcc
241 gccgccgcag cgcgaacatg gacgccgtca acgccttcaa ccaggagctc ttttcgctta
301 tggatatgaa acctcccatc tctagagcca agatgattct catcactaaa gctgctatta
361 aagctattaa gctttataag catgtagttc aaatagtaga aaagttcatc aaaaagtgta
421 aaccagaata caaggttccg ggattatatg taattgactc aattgtgcga cagtctcgtc
481 atcagtttgg aactgataaa gatgtttttg ggccaagatt ctctaaaaac ataactgcca
541 cattccaata tttatatctt tgtccatctg aagataagag taaaatagtt cgtgtgctga
601 acctttggca aaaaaatgga gtgttcaaaa ttgaaattat tcaacctctt ttggacatgg
661 cagcgggaac cagtaatgca gccccagtag cagaaaatgt taccaataat gaaggctcac
721 ctccacctcc agtaaaagtt tcttctgaac ctcccacaca agccactcca aactccgtcc
781 cagctgtacc acagttgccc agctctgatg cttttgctgc tgtggctcag ctgtttcaga
841 caactcaagg ccaacagctt cagcagatcc ttcagacttt tcaacagcct ccaaaaccac
901 agtctcctgc ccttgacaat gctgtgatgg ctcaggttca ggctatcaca gctcagttaa
961 agacaactcc tacacaacca tctgaacaaa aagctgcttt ccccccacct gaacagaaaa
1021 ctgcatttga caagaagttg cttgatagat ttgactatga tgatgagcca gaagctgtgg
1081 aagaatcaaa gaaagaggat accactgccg tcaccacgac agcacctgct gccgcagtac
1141 cccctgcacc caccgccacc gtgcctgctg ctgctgcacc cgctgctgcc tctcctcctc
1201 ctccacaggc accatttggc tttcctggag atggcatgca gcagccagca tacacacagc
1261 atcaaaatat ggatcagttt cagccacgaa tgatgggaat acaacaggat ccaatgcacc
1321 atcaggttcc acttcctcct aatggacaaa tgccaggatt tggacttctt cctacacctc
1381 catttcctcc catggctcag cctgtgattc ctccaactcc accagtgcag cagcctttcc
1441 aagcttcttt tcaggcacaa aatgaaccac ttacacagaa gccgcatcag caggaaatgg
1501 aagtagaaca accttgtatt caagaggtta agcgacatat gtctgataac agaaagtcaa
1561 gatctaggtc agcatccagg tcaccaaaaa ggaggcgatc tagatctggt tctagatctc
1621 gaaggtctcg gcatcgacgt tctcgatctc ggtccaggga tagacgccga cattctcccc
1681 gatctcgatc tcaagaaaga cgggatcgag aaaaagagag agaacgtcga caaaaaggcc
1741 tccctcaagt gaaaccggaa actgcaagtg tttgcagtac taccctctgg gtggggcagc
1801 tggacaaaag aactactcag caggatgttg ccagtctctt ggaagagttt ggtccaattg
1861 aatcaattaa tatgattcct cccaggggtt gtgcctatat tgttatggtt cataggcaag
1921 atgcctatcg tgccctgcag aaactgagcc gaggaaacta taaagtgaac cagaaatcca
1981 taaagattgc ctgggcctta aacaaaggaa taaaggcaga ttataagcag tattgggatg
2041 tagaacttgg tgttacttat attccatggg acaaagtcaa gcctgaggaa ctggagagtt
2101 tttgtgaagg aggaatgttg gacagtgaca cacttaaccc agattggaaa ggaattccta
2161 agaagcctga aaatgaagtt gctcaaaatg gaggtgctga aacctcacac acagaaccag
2221 tatcacccat acctaaacca ttacctgtgc ctgtccctcc tattcctgtt cctgcaccta
2281 taacagtgcc acctccacag gtcccaccac atcaaccggg tccacctgta gttggtgctc
2341 tccagccgcc tgctttcacg cctcctctgg gaataccgcc tccaggcttt ggtcctggtg
2401 ttcctcctcc ccctcctcct ccaccatttt tgcgcccagg attcaaccca atgcatttac
2461 caccaggttt tctgcctcct ggacccccac ctcctataac tccaccagta tccattcctc
2521 ctcctcacac tccaccaata agcatcccaa actctactat cgctggtata aatgaagaca
2581 ctacaaaaga cttatctatt ggaaatccca ttccaacagt ggtgtctggg gctagaggaa
2641 acgccgagtc tggtgacagc gtgaaaatgt atggctctgc cgtgccacct gctgcaccca
2701 cgaatctgcc cacccctcct gtaacccagc ctgtttcact tcttggcact caaggagttg
2761 cccctggtcc tgtaattgga cttcaggcac catctactgg tcttcttggc gcccggcccg
2821 gtctcatccc actccagcgc cctccaggaa tgcccccacc tcacttacag cggttccctt
2881 tgatgccgcc ccgtcccatg ccaccgcaca tgatgcacag aggcccaccg ccaggaccag
2941 ggggctttgc gatgcctcca cctcatggaa tgaaaggtcc cttcccaccg catggcccct
3001 ttgttaggcc tggtggaatg ccagggctcg ggggcccagg gccaggccca gggggtcctg
3061 aagacagaga cggaaggcaa cagccgccgc agcagccaca gcagcagcca cagccgcagg
3121 cgccccagca accacagcag cagcagcagc agcagccacc accatcacaa cagcctccac
3181 caacacagca gcagccacag cagtttagaa atgataacag gcagcagttc aattcaggta
3241 gagaccaaga aaggtttgga agaagatctt ttggaaatag ggtggaaaat gaccgggaac
3301 ggtatgggaa ccgtaatgat gatagagata atagtaaccg tgacaggaga gagtggggaa
3361 ggaggagccc tgaccgggac aggcacagag acttggaaga gagaaataga cgctctagtg
3421 ggcatcgaga cagagagaga gattctagag atagagagtc tcgtagagag aaggaagaag
3481 cccgaggaaa ggaaaagcct gaggtgacag acagggcagg tggtaacaaa accgttgaac
3541 ctcccattag ccaagtggga aatgtagaca ctgcttcaga acttgagaag ggggtgtctg
3601 aggctgcagt cctaaagcct tctgaagagt tacctgctga ggctacctca tccgttgaac
3661 ccgaaaagga ttctggctca gcagcagagg ctcctcgtta gagactggaa tttgtgaaaa
3721 tgtgacagtg acacttcctg gagtgtagag cttgaggtgt acagatgctg tattatatcc
3781 gctcccgctg tactgcagcc ccgcgccagc tggtggggaa ctgtaagcaa tttgattgct
3841 tcccttctat ttaaaaatag ccacaaaaaa aaaaaaaaaa aa
//