LOCUS       BC064947                3597 bp    mRNA    linear   HUM 21-JUL-2006
DEFINITION  Homo sapiens sphingomyelin phosphodiesterase 4, neutral membrane
            (neutral sphingomyelinase-3), mRNA (cDNA clone MGC:70674
            IMAGE:6023304), complete cds.
ACCESSION   BC064947
VERSION     BC064947.1
KEYWORDS    MGC.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 3597)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
   PUBMED   12477932
REFERENCE   2  (bases 1 to 3597)
  CONSRTM   NIH MGC Project
  TITLE     Direct Submission
  JOURNAL   Submitted (02-JAN-2004) National Institutes of Health, Mammalian
            Gene Collection (MGC), Bethesda, MD 20892-2590, USA
  REMARK    NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT     Contact: MGC help desk
            Email: cgapbs-r@mail.nih.gov
            Tissue Procurement: DCTD/DTP/Gazdar
            cDNA Library Preparation: Life Technologies, Inc.
            cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
            DNA Sequencing by: National Institutes of Health Intramural
            Sequencing Center (NISC),
            Gaithersburg, Maryland;
            Web site: http://www.nisc.nih.gov/
            Contact: nisc_mgc@nhgri.nih.gov
            Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
            Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
            Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
            Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
            Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
            McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
            Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
            Young,A., Zhang,L.-H. and Green,E.D.
            
            Clone distribution: MGC clone distribution information can be found
            through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
            Series: IRAK Plate: 140 Row: c Column: 18
            This clone was selected for full length sequencing because it
            passed the following selection criteria: matched mRNA gi: 13443032.
FEATURES             Location/Qualifiers
     source          1..3597
                     /db_xref="H-InvDB:HIT000261654"
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /clone="MGC:70674 IMAGE:6023304"
                     /tissue_type="Lung, large cell carcinoma"
                     /clone_lib="NIH_MGC_68"
                     /lab_host="DH10B"
                     /note="Vector: pCMV-SPORT6"
     gene            1..3597
                     /gene="SMPD4"
                     /gene_synonym="FLJ20297"
                     /gene_synonym="FLJ20756"
                     /gene_synonym="KIAA1418"
                     /gene_synonym="nSMase-3"
                     /gene_synonym="NSMASE3"
                     /db_xref="GeneID:55627"
                     /db_xref="HGNC:HGNC:32949"
     CDS             229..2436
                     /gene="SMPD4"
                     /gene_synonym="FLJ20297"
                     /gene_synonym="FLJ20756"
                     /gene_synonym="KIAA1418"
                     /gene_synonym="nSMase-3"
                     /gene_synonym="NSMASE3"
                     /codon_start=1
                     /product="SMPD4 protein"
                     /protein_id="AAH64947.1"
                     /db_xref="GeneID:55627"
                     /db_xref="HGNC:HGNC:32949"
                     /translation="MMKLVYKLQAEDYKFDFPVSYLPGPVKASIQECILPDSPLYHNK
                     VQFTPTGGLGLNLALNPFEYYIFFFALSLITQKPLPVSLHVRTSDCAYFILVDRYLSW
                     FLPTEGSVPPPLSSSPGGTSPSPPPRTPAIPFASYGLHHTSLLKRHISHQTSVNADPA
                     SHEIWRSETLLQVFVEMWLHHYSLEMYQKMQSPHAKLEVLHYRLSVSSALYSPAQPSL
                     QALHAYQESFTPTEEHVLVVRLLLKHLHAFANSLKPEQASPSAHSHATSPLEEFKRAA
                     VPRFVQQKLYLFLQHCFGHWPLDASFRAVLEMWLSYLQPWRYAPDKQAPGSDSQPRCV
                     SEKWAPFVQENLLMYTKLFVGFLNRALRTDLVSPKHALMVFRVAKVFAQPNLAEMIQK
                     GEQLFLEPELVIPHRQHRLFTAPTFTGSFLSPWPPAVTDASFKVKSHVYSLEGQDCKY
                     TPMFGPEARTLVLRLAQLITQAKHTAKSISDQCAESPAGHSFLSWLGFSSMDTNGSYT
                     ANDLDEMGQDSVRKTDEYLEKALEYLRQIFRLSEAQLRQFTLALGTTQDENGKKQLPD
                     CIVGEDGLILTPLGRYQIINGLRRFEIEYQGDPELQPIRSYEIASLVRTLFRLSSAIN
                     HRFAGQMAALCSRDDFLGSFCRYHLTEPGLASRHLLSPVGRRQVAGHTRGPRLSLRFL
                     GSYRTLVSLLLAFFVASLFCVGPLPCTLLLTLGYVLYASAMTLLTERGKLHQP"
BASE COUNT          757 a         1118 c          939 g          783 t
ORIGIN      
        1 cggaatggcg gcttccatct ctgaggcgag cgacgctatg gatcccacag tggtttgcta
       61 agaaggccat tttcaactct ccactggagg ctgctatggc gttccctcac ctgcagcagc
      121 ccagctttct actggctagc ctgaaagctg actctataaa taagcccttt gcacagcagt
      181 gccaagactt ggttaaagtc attgaggact ttccagcaaa gtggcccaat gatgaagttg
      241 gtttataagc ttcaagctga agactataag ttcgactttc ctgtctccta cttgcctggt
      301 cctgtgaagg cgtccatcca ggagtgcatc ctccctgaca gtcctctgta ccacaacaag
      361 gtccagttca cccctactgg gggccttggt ctgaacttgg ccctgaatcc gttcgagtat
      421 tacatattct tctttgcctt gagcctcatc actcagaagc cacttcctgt gtccctccac
      481 gtccgtactt cagactgtgc ctatttcatc ctggtggaca ggtacctgtc atggttcctg
      541 cccaccgaag gcagtgtgcc cccaccactc tcctccagcc caggggggac cagcccctca
      601 ccacctccca ggacaccagc catacccttt gcttcctatg gcctccacca cactagcctc
      661 ctaaagcgac acatctctca tcagacatct gtgaatgcag accccgcctc ccacgagatc
      721 tggaggtcag aaactctgct ccaggttttt gttgaaatgt ggcttcatca ctattccttg
      781 gagatgtatc aaaaaatgca gtcccctcat gccaagctgg aggttctgca ctaccgactc
      841 agtgtctcca gcgccctcta cagccccgcc caacccagcc tccaggccct ccacgcctac
      901 caagagtcgt tcacgcctac tgaggagcat gtgttggtgg tgcgcctgct gctgaagcac
      961 ctgcacgcct ttgccaacag cctgaagcca gagcaggcct caccctccgc ccactcccac
     1021 gccaccagcc ccctggagga gttcaaacgg gctgctgtcc cgaggttcgt ccagcagaaa
     1081 ctctacctct tcttgcagca ttgctttggc cactggcccc tggacgcatc gttcagagct
     1141 gtcctggaga tgtggctgag ctacctgcag ccgtggcggt acgcgcctga caagcaggct
     1201 ccgggcagcg actcccagcc ccggtgtgtg tcggagaaat gggcaccctt tgtccaggag
     1261 aacctgctga tgtacaccaa gttgtttgtg ggctttctga accgcgcgct ccgcacagac
     1321 ctggtcagcc ccaagcacgc gctcatggtg ttccgagtgg ccaaagtctt tgcccagccc
     1381 aacctggctg agatgattca gaaaggtgag cagctattcc tggagccaga gctggtcatc
     1441 ccccaccgcc agcaccgact cttcacggcc cccacattca ctgggagctt cctgtcaccc
     1501 tggccaccag cggtcactga tgcctccttc aaggtgaaga gccacgtcta cagcctggag
     1561 ggccaggact gcaagtacac cccgatgttt gggcccgagg cccgcaccct ggtcctgcgc
     1621 ctcgctcagc tcatcacaca ggccaaacac acagccaagt ccatctccga ccagtgtgcg
     1681 gagagcccgg ctggccactc cttcctctca tggctgggct ttagctccat ggacaccaat
     1741 ggctcctaca cagccaacga cctggacgag atggggcaag acagtgtccg gaagacagat
     1801 gaatacctgg agaaggccct ggagtacctg cgccagatat tccggctcag cgaagcgcag
     1861 ctcaggcagt tcacactcgc cttgggcacc acccaggatg agaatggaaa aaagcaactc
     1921 cccgactgca tcgtgggtga ggacggactc atccttacgc ccctggggcg gtaccagatc
     1981 atcaatgggc tgcgaaggtt tgaaattgag taccaggggg acccggagct gcagcccatc
     2041 cggagctatg agatcgccag cttggtccgc acactcttta ggctgtcgtc tgccatcaac
     2101 cacagatttg caggacagat ggcggctctg tgttcccggg atgacttcct cggcagcttc
     2161 tgtcgctacc acctcacaga acctgggctg gccagcaggc acctgctgag ccctgtgggg
     2221 cggaggcagg tggccggcca cacccgcggc cccaggctca gcctgcgctt cctgggcagt
     2281 taccggacgc tggtctcgct gctgctggcc ttcttcgtgg cctctctgtt ctgcgtcggg
     2341 cccctcccat gcacgctgct gctcaccctg ggctatgtcc tctacgcctc tgccatgaca
     2401 ctgctgaccg agcgggggaa gctgcaccag ccctgaaggt gtcagctgcc ttcagagcag
     2461 gctggaggga tttgccacac agccccaccc ttgggctgag aggacctggg aagcccctcc
     2521 aggagggaac acggtcatcc tcgggcttct ggagcggggt tcctgcagcc gcagaggcat
     2581 ctggaggaaa cgcaaccaag aaaggaaggc aggtgggccc cagcaaagga gtagctgcca
     2641 gggctcaaca gctacgctct gtgacagcgc agagctcagc gccggccttt ccctccctcc
     2701 gccaaggact cacggccaag ccagctctcg gggccttttt tccagtgccc atttggctac
     2761 tctgctgcac caagcttggg agccagcctg ccaacagcca cctgggcctg gcctccccac
     2821 tggctggcct tgaggttggc agagtgggtt gtggcgcttc ctctctctgt gtgggaccag
     2881 gacagtggct taagtctcca ctccaggaaa gaatcaaagt ttctagagtt gtgagaaaac
     2941 cagagagtgg ctgtcctgat tcttcactgt gaggggcgtt cttcatgttc tcccagctgt
     3001 tccaagactg ggccgtagaa ttccatgttt caggagccta agaccctccc agagcccagg
     3061 ggcttcaccg cagaccccaa gccattgagc acatcaccca aagcagtggc caacatcgcg
     3121 gacccctgtg ccttgtcaca gatgggtgct ggtcctcagg cgttggggac actgctgggt
     3181 cgatggggtc ggattctgcc agtttctgct ctgcagccaa agatggtcag aagcattgtc
     3241 acttcagtaa catcaagtgc tcaaagacat ggcaaccgtt cagtggtact taagtattca
     3301 aaatatacaa ctacagattc tctgacagaa accagcacgg ggtcttcacc ttcattcacc
     3361 ccacaggcga catgcgaggg agaacagcat ctcagtggtg atttccaaac caagcctttg
     3421 ttttcggtgt ggggttttgg gggtttgctt taatgttttt gaaattgtaa atgttgggct
     3481 ttttattttg atgtaaactg agaataatgg cattttaggg cctgtgacca aaaatgaagc
     3541 ttgtaacgac catggatctg aataaacatg tccttgcttc tgaaaaaaaa aaaaaaa
//