LOCUS BC064947 3597 bp mRNA linear HUM 21-JUL-2006 DEFINITION Homo sapiens sphingomyelin phosphodiesterase 4, neutral membrane (neutral sphingomyelinase-3), mRNA (cDNA clone MGC:70674 IMAGE:6023304), complete cds. ACCESSION BC064947 VERSION BC064947.1 KEYWORDS MGC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3597) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3597) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (02-JAN-2004) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: DCTD/DTP/Gazdar cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: National Institutes of Health Intramural Sequencing Center (NISC), Gaithersburg, Maryland; Web site: http://www.nisc.nih.gov/ Contact: nisc_mgc@nhgri.nih.gov Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B., Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S., Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P., Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R., Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C., McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W., Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L., Young,A., Zhang,L.-H. and Green,E.D. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 140 Row: c Column: 18 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 13443032. FEATURES Location/Qualifiers source 1..3597 /db_xref="H-InvDB:HIT000261654" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="MGC:70674 IMAGE:6023304" /tissue_type="Lung, large cell carcinoma" /clone_lib="NIH_MGC_68" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" gene 1..3597 /gene="SMPD4" /gene_synonym="FLJ20297" /gene_synonym="FLJ20756" /gene_synonym="KIAA1418" /gene_synonym="nSMase-3" /gene_synonym="NSMASE3" /db_xref="GeneID:55627" /db_xref="HGNC:HGNC:32949" CDS 229..2436 /gene="SMPD4" /gene_synonym="FLJ20297" /gene_synonym="FLJ20756" /gene_synonym="KIAA1418" /gene_synonym="nSMase-3" /gene_synonym="NSMASE3" /codon_start=1 /product="SMPD4 protein" /protein_id="AAH64947.1" /db_xref="GeneID:55627" /db_xref="HGNC:HGNC:32949" /translation="MMKLVYKLQAEDYKFDFPVSYLPGPVKASIQECILPDSPLYHNK VQFTPTGGLGLNLALNPFEYYIFFFALSLITQKPLPVSLHVRTSDCAYFILVDRYLSW FLPTEGSVPPPLSSSPGGTSPSPPPRTPAIPFASYGLHHTSLLKRHISHQTSVNADPA SHEIWRSETLLQVFVEMWLHHYSLEMYQKMQSPHAKLEVLHYRLSVSSALYSPAQPSL QALHAYQESFTPTEEHVLVVRLLLKHLHAFANSLKPEQASPSAHSHATSPLEEFKRAA VPRFVQQKLYLFLQHCFGHWPLDASFRAVLEMWLSYLQPWRYAPDKQAPGSDSQPRCV SEKWAPFVQENLLMYTKLFVGFLNRALRTDLVSPKHALMVFRVAKVFAQPNLAEMIQK GEQLFLEPELVIPHRQHRLFTAPTFTGSFLSPWPPAVTDASFKVKSHVYSLEGQDCKY TPMFGPEARTLVLRLAQLITQAKHTAKSISDQCAESPAGHSFLSWLGFSSMDTNGSYT ANDLDEMGQDSVRKTDEYLEKALEYLRQIFRLSEAQLRQFTLALGTTQDENGKKQLPD CIVGEDGLILTPLGRYQIINGLRRFEIEYQGDPELQPIRSYEIASLVRTLFRLSSAIN HRFAGQMAALCSRDDFLGSFCRYHLTEPGLASRHLLSPVGRRQVAGHTRGPRLSLRFL GSYRTLVSLLLAFFVASLFCVGPLPCTLLLTLGYVLYASAMTLLTERGKLHQP" BASE COUNT 757 a 1118 c 939 g 783 t ORIGIN 1 cggaatggcg gcttccatct ctgaggcgag cgacgctatg gatcccacag tggtttgcta 61 agaaggccat tttcaactct ccactggagg ctgctatggc gttccctcac ctgcagcagc 121 ccagctttct actggctagc ctgaaagctg actctataaa taagcccttt gcacagcagt 181 gccaagactt ggttaaagtc attgaggact ttccagcaaa gtggcccaat gatgaagttg 241 gtttataagc ttcaagctga agactataag ttcgactttc ctgtctccta cttgcctggt 301 cctgtgaagg cgtccatcca ggagtgcatc ctccctgaca gtcctctgta ccacaacaag 361 gtccagttca cccctactgg gggccttggt ctgaacttgg ccctgaatcc gttcgagtat 421 tacatattct tctttgcctt gagcctcatc actcagaagc cacttcctgt gtccctccac 481 gtccgtactt cagactgtgc ctatttcatc ctggtggaca ggtacctgtc atggttcctg 541 cccaccgaag gcagtgtgcc cccaccactc tcctccagcc caggggggac cagcccctca 601 ccacctccca ggacaccagc catacccttt gcttcctatg gcctccacca cactagcctc 661 ctaaagcgac acatctctca tcagacatct gtgaatgcag accccgcctc ccacgagatc 721 tggaggtcag aaactctgct ccaggttttt gttgaaatgt ggcttcatca ctattccttg 781 gagatgtatc aaaaaatgca gtcccctcat gccaagctgg aggttctgca ctaccgactc 841 agtgtctcca gcgccctcta cagccccgcc caacccagcc tccaggccct ccacgcctac 901 caagagtcgt tcacgcctac tgaggagcat gtgttggtgg tgcgcctgct gctgaagcac 961 ctgcacgcct ttgccaacag cctgaagcca gagcaggcct caccctccgc ccactcccac 1021 gccaccagcc ccctggagga gttcaaacgg gctgctgtcc cgaggttcgt ccagcagaaa 1081 ctctacctct tcttgcagca ttgctttggc cactggcccc tggacgcatc gttcagagct 1141 gtcctggaga tgtggctgag ctacctgcag ccgtggcggt acgcgcctga caagcaggct 1201 ccgggcagcg actcccagcc ccggtgtgtg tcggagaaat gggcaccctt tgtccaggag 1261 aacctgctga tgtacaccaa gttgtttgtg ggctttctga accgcgcgct ccgcacagac 1321 ctggtcagcc ccaagcacgc gctcatggtg ttccgagtgg ccaaagtctt tgcccagccc 1381 aacctggctg agatgattca gaaaggtgag cagctattcc tggagccaga gctggtcatc 1441 ccccaccgcc agcaccgact cttcacggcc cccacattca ctgggagctt cctgtcaccc 1501 tggccaccag cggtcactga tgcctccttc aaggtgaaga gccacgtcta cagcctggag 1561 ggccaggact gcaagtacac cccgatgttt gggcccgagg cccgcaccct ggtcctgcgc 1621 ctcgctcagc tcatcacaca ggccaaacac acagccaagt ccatctccga ccagtgtgcg 1681 gagagcccgg ctggccactc cttcctctca tggctgggct ttagctccat ggacaccaat 1741 ggctcctaca cagccaacga cctggacgag atggggcaag acagtgtccg gaagacagat 1801 gaatacctgg agaaggccct ggagtacctg cgccagatat tccggctcag cgaagcgcag 1861 ctcaggcagt tcacactcgc cttgggcacc acccaggatg agaatggaaa aaagcaactc 1921 cccgactgca tcgtgggtga ggacggactc atccttacgc ccctggggcg gtaccagatc 1981 atcaatgggc tgcgaaggtt tgaaattgag taccaggggg acccggagct gcagcccatc 2041 cggagctatg agatcgccag cttggtccgc acactcttta ggctgtcgtc tgccatcaac 2101 cacagatttg caggacagat ggcggctctg tgttcccggg atgacttcct cggcagcttc 2161 tgtcgctacc acctcacaga acctgggctg gccagcaggc acctgctgag ccctgtgggg 2221 cggaggcagg tggccggcca cacccgcggc cccaggctca gcctgcgctt cctgggcagt 2281 taccggacgc tggtctcgct gctgctggcc ttcttcgtgg cctctctgtt ctgcgtcggg 2341 cccctcccat gcacgctgct gctcaccctg ggctatgtcc tctacgcctc tgccatgaca 2401 ctgctgaccg agcgggggaa gctgcaccag ccctgaaggt gtcagctgcc ttcagagcag 2461 gctggaggga tttgccacac agccccaccc ttgggctgag aggacctggg aagcccctcc 2521 aggagggaac acggtcatcc tcgggcttct ggagcggggt tcctgcagcc gcagaggcat 2581 ctggaggaaa cgcaaccaag aaaggaaggc aggtgggccc cagcaaagga gtagctgcca 2641 gggctcaaca gctacgctct gtgacagcgc agagctcagc gccggccttt ccctccctcc 2701 gccaaggact cacggccaag ccagctctcg gggccttttt tccagtgccc atttggctac 2761 tctgctgcac caagcttggg agccagcctg ccaacagcca cctgggcctg gcctccccac 2821 tggctggcct tgaggttggc agagtgggtt gtggcgcttc ctctctctgt gtgggaccag 2881 gacagtggct taagtctcca ctccaggaaa gaatcaaagt ttctagagtt gtgagaaaac 2941 cagagagtgg ctgtcctgat tcttcactgt gaggggcgtt cttcatgttc tcccagctgt 3001 tccaagactg ggccgtagaa ttccatgttt caggagccta agaccctccc agagcccagg 3061 ggcttcaccg cagaccccaa gccattgagc acatcaccca aagcagtggc caacatcgcg 3121 gacccctgtg ccttgtcaca gatgggtgct ggtcctcagg cgttggggac actgctgggt 3181 cgatggggtc ggattctgcc agtttctgct ctgcagccaa agatggtcag aagcattgtc 3241 acttcagtaa catcaagtgc tcaaagacat ggcaaccgtt cagtggtact taagtattca 3301 aaatatacaa ctacagattc tctgacagaa accagcacgg ggtcttcacc ttcattcacc 3361 ccacaggcga catgcgaggg agaacagcat ctcagtggtg atttccaaac caagcctttg 3421 ttttcggtgt ggggttttgg gggtttgctt taatgttttt gaaattgtaa atgttgggct 3481 ttttattttg atgtaaactg agaataatgg cattttaggg cctgtgacca aaaatgaagc 3541 ttgtaacgac catggatctg aataaacatg tccttgcttc tgaaaaaaaa aaaaaaa //