LOCUS BC064839 3660 bp mRNA linear HTC 13-APR-2006 DEFINITION Homo sapiens collagen, type XVI, alpha 1, mRNA (cDNA clone IMAGE:6178905), with apparent retained intron. ACCESSION BC064839 VERSION BC064839.1 KEYWORDS HTC. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3660) AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002) PUBMED 12477932 REFERENCE 2 (bases 1 to 3660) CONSRTM NIH MGC Project TITLE Direct Submission JOURNAL Submitted (02-JAN-2004) National Institutes of Health, Mammalian Gene Collection (MGC), Bethesda, MD 20892-2590, USA REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov COMMENT Contact: MGC help desk Email: cgapbs-r@mail.nih.gov Tissue Procurement: Dr. James R. Lupski cDNA Library Preparation: Life Technologies, Inc. cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL) DNA Sequencing by: Genome Sequence Centre, BC Cancer Agency, Vancouver, BC, Canada info@bcgsc.bc.ca Martin Hirst, Thomas Zeng, Ryan Morin, Michelle Moksa, Johnson Pang, Diana Mah, Jing Wang, Kieth Fichter, Eric Chuah, Allen Delaney, Rob Kirkpatrick, Agnes Baross, Sarah Barber, Mabel Brown-John, Steve S. Chand, William Chow, Ryan Babakaiff, Dave Wong, Corey Matsuo, Jaclyn Beland, Susan Gibson, Luis delRio, Ruth Featherstone, Malachi Griffith, Obi Griffith, Ran Guin, Nancy Liao, Kim MacDonald, Mike R. Mayo, Josh Moran, Diana Palmquist, JR Santos, Duane Smailus, Jeff Stott, Miranda Tsai, George Yang, Jacquie Schein, Asim Siddiqui,Steven Jones, Rob Holt, Marco Marra. Clone distribution: MGC clone distribution information can be found through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov Series: IRAK Plate: 141 Row: b Column: 17 This clone was selected for full length sequencing because it passed the following selection criteria: matched mRNA gi: 18641351 This clone has the following problem: retained intron. FEATURES Location/Qualifiers source 1..3660 /db_xref="H-InvDB:HIT000261596" /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /clone="IMAGE:6178905" /tissue_type="Peripheral Nervous System, dorsal root ganglion" /clone_lib="Lupski_dorsal_root_ganglion" /lab_host="DH10B" /note="Vector: pCMV-SPORT6" BASE COUNT 764 a 1075 c 1222 g 599 t ORIGIN 1 cctgactctt aaagggcccg caggagcccc cttccagggc agctctgggc acgtagggtc 61 ccgcctagct cgaggatcgc tcacctggcg gtgaggcagg aggggcgggc ctgggagctc 121 ggccagaccc ggggcggggc tgtgcacccc gcagtctagc cgcctctggt gccgctggag 181 ccccctctag gccctcctcc tcctcctccc tggcgggccg gtccagctgt gttccattag 241 tgtccctggc aggcccccag ccccctggaa ccgcctctct tcccccaccc ggagtggccg 301 gcagtccccg gcaggcgtgc gccgggcagc agacagccgg gagagctcga gcgccaggaa 361 gctggggacc cgtgaccgtc acggagagat agagaacccc tagcggacct gaggaacctg 421 ggctctgctt cctccgcctg ctgcctggac tgctcagtga ggtgggggga tccccggcca 481 ccggtgctgt ggctgtagct gacctctttg gaccgggatg tgggtatcct gggctcctgg 541 cctgtggctg ctcggtcttt gggctacctt cggccatggg gcaaatacag gtgcacaatg 601 cccaccttca cagcaggaag gactcaaatt ggaacacagt agtagcctgc cagccaacgt 661 gactggcttc aacctcatcc accgactcag cctcatgaag acgtctgcca tcaagaagat 721 ccgcaacccc aaggggcctc tcatcctgcg cctgggggcg gcccccgtga cccagcccac 781 gcgaagagta ttccctcggg gtctcccgga ggagtttgcc ctggtgctga cactactgct 841 gaagaaacac acccaccaga agacgtggta tctgtttcaa gtgaccgatg caaatgggta 901 tccacagata tccctggaag tcaacagcca agagcggagc ctggagctca gggcccaggg 961 ccaggatggc gactttgtgt cctgcatctt cccagtgccc cagctcttcg acttgcgttg 1021 gcacaagctg atgctgagtg tggctggacg tgtggcctct gtgcacgtgg actgcagctc 1081 agcctcctcc cagcctctgg ggccccgacg acccatgagg cctgtgggcc atgtatttct 1141 aggcttggat gctgagcagg gcaagcctgt ctcgtttgac cttcagcagg tgcacatcta 1201 ctgtgacccg gagctcgtgc tggaggaggg ctgctgtgag attttaccag cagggtgccc 1261 cccagagacc tccaaggccc gccgggacac ccagagcaat gagctcattg agatcaatcc 1321 acagtctgaa ggcaaggtct acacccgctg cttctgcctg gaggagcctc aaaacagcga 1381 ggtggatgcc cagctgacgg gaagaatcag ccagaaggca gaaaggggag caaaggtcca 1441 tcaggagaca gcagccgatg agtgtccgcc ctgtgtccat ggtgcccggg acagcaatgt 1501 cacacttgct ccctctggcc ccaagggagg gaaaggtgag cggggcctgc ctggtccacc 1561 aggctccaag ggagagaagg gagcacgggg caatgactgt gttcgaatct ccccggatgc 1621 cccacttcag tgtgcagaag gcccgaaggg agagaagggg gagtcaggag ctctgggacc 1681 ctcaggactc ccaggctcaa caggcgagaa gggccagaaa ggcgagaagg gcgacggagg 1741 catcaagggc gtgccgggaa agccaggccg ggacggccgg ccaggagaga tctgtgtcat 1801 tgggcccaaa gggcagaagg gagaccctgg ctttgttggg cctgaggggc tggcaggaga 1861 gcctgggccc cccggcctcc ctggaccccc tgggatagga ctgcctggga ccccggggga 1921 tccaggtggc ccaccaggcc ccaagggaga caagggcagc tcggggatcc caggaaagga 1981 aggccctggt gggaaacctg ggaagccagg tgtgaaggga gagaagggtg acccctgtga 2041 agtgtgccca acactgcctg aagggttcca gaactttgtt ggacttcctg gaaagccagg 2101 gcccaaaggg gagcctggtg atcctgtacc agccagggga gaccctggca tccaaggcat 2161 caaaggagag aagggggagc cctgcttgtc ctgcagctcg gttgtagggg cccagcatct 2221 tgtgtcctcc acaggggcca gtggagatgt gggttcccct ggctttggtc tgcctggcct 2281 tccgggtaga gctggggttc cagggctgaa aggagagaag ggtaacttcg gggaggcagg 2341 gccagctggc agtccagggc caccaggacc agtggggcca gcaggcatca aaggggcgaa 2401 gggggagccc tgtgagccgt gcccagccct gtccaacctt caggatgggg atgtccgtgt 2461 ggtggccttg cctggcccat ccggagagaa gggggaacct gggcctccag gctttggctt 2521 gccaggaaaa cagggcaagg ctggagagcg tggactgaag gggcagaagg gtgatgctgg 2581 gaatcctgga gaccctggaa cgccgggcac cacagggcgg ccaggactgt caggagagcc 2641 tggagttcag ggccccgcgg ggccaaaagg agaaaagggt gatggctgca ctgcctgccc 2701 cagcctgcag gggacagtga cagacatggc aggacggcct gggcagcccg gccccaaagg 2761 agagcagggc cccgaaggcg tgggccgacc tggtaaaccc ggccaacccg gtctaccagg 2821 agttcaaggg cccccaggac tgaagggcgt gcagggagag ccagggcctc caggaagggg 2881 agtccaggga ccccaggggg agcctggagc cccgggtttg cctggcattc agggacttcc 2941 gggacctcgg ggaccacctg gccccactgg agagaagggt gcccagggat ctccaggggt 3001 gaaaggagcc accggacccg tgggacctcc tggggccagt gtctctgggc ctccgggccg 3061 tgatgggcag caaggacaga cgggactcag aggaacacca ggtgaaaaag gaccacgagg 3121 agagaagggt gagccagggg agtgctcctg cccctctcaa ggagacctca tcttctctgg 3181 catgccgggt ccaccaggta ttcccggacc accaggcccc cctggagtac ctgggctgca 3241 ggtaaagggg gagaagagaa tgaggagctt gggtggcaga gctcatgggt caggatggct 3301 gctcccggct ggaccccaag gatgctgctc ccccacccca aaaacacaga catgccattt 3361 ctcactcctc tgtttacctg cctcccaggg tggcaaggag ggcccactga gcctctaggc 3421 caggctctgc actcccagca ctgtttcaag caatgcactg ttgcatcagc tgtcaggcac 3481 ccacaatctg ggtcagataa aaatccctta ccctggtaca gagcccggcc cactgttttg 3541 gagtagcatt caacactcat tcatgcaaca tgtgtttttg cacatttgct attttctggc 3601 actgctttaa ctgctgtgaa tacagtagtg gctaaaaata aaaaaaaaaa aaaaaaaaaa //