LOCUS BC064550 2474 bp mRNA linear HUM 15-JUL-2006
DEFINITION Homo sapiens synaptophysin, mRNA (cDNA clone MGC:70359
IMAGE:5768012), complete cds.
ACCESSION BC064550
VERSION BC064550.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2474)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2474)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (22-DEC-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 139 Row: o Column: 24
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 56699493.
FEATURES Location/Qualifiers
source 1..2474
/db_xref="H-InvDB:HIT000261469"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:70359 IMAGE:5768012"
/tissue_type="Brain, fetal, whole pooled"
/clone_lib="NIH_MGC_121"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2474
/gene="SYP"
/db_xref="GeneID:6855"
/db_xref="HGNC:HGNC:11506"
/db_xref="MIM:313475"
CDS 17..958
/gene="SYP"
/codon_start=1
/product="synaptophysin"
/protein_id="AAH64550.1"
/db_xref="GeneID:6855"
/db_xref="HGNC:HGNC:11506"
/db_xref="MIM:313475"
/translation="MLLLADMDVVNQLVAGGQFRVVKEPLGFVKVLQWVFAIFAFATC
GSYSGELQLSVDCANKTESDLSIEVEFEYPFRLHQVYFDAPTCRGGTTKVFLVGDYSS
SAEFFVTVAVFAFLYSMGALATYIFLQNKYRENNKGPMLDFLATAVFAFMWLVSSSAW
AKGLSDVKMATDPENIIKEMPVCRQTGNTCKELRDLVTSGLNTSVVFGFLNLVLWVGN
LWFVFKETGWAAPFLRAPPGAPEKQPAPGDAYGDAGYGQGPGGYGPQDSYGPQGGYQP
DYGQPAGSGGSGYGPQGDYGQQGYGPQGAPTSFSNQM"
BASE COUNT 527 a 675 c 741 g 531 t
ORIGIN
1 gccccctgca ttgctgatgc tgctgctggc ggacatggac gtggtgaatc agctggtggc
61 tgggggtcag ttccgggtgg tcaaggagcc cctcggcttt gtgaaggtgc tgcaatgggt
121 cttcgccatc ttcgcctttg ccacatgcgg cagctacagt ggggagctcc agctgagcgt
181 ggattgtgcc aacaagaccg agagtgacct cagcatcgag gtcgagttcg agtacccctt
241 caggctgcac caagtgtact ttgatgcacc cacctgccga gggggcacca ccaaggtctt
301 cttagttggg gactactcct cgtcagccga attctttgtc accgtggccg tgtttgcctt
361 cctctactcc atgggggctc tggccaccta catcttcctg cagaacaagt accgagagaa
421 taacaaaggg cccatgctgg actttctggc cacggctgtg ttcgccttca tgtggctagt
481 tagctcatcg gcatgggcca aggggctgtc agatgtgaag atggccacag acccagagaa
541 cattatcaag gagatgcctg tctgccgcca gacagggaac acatgcaagg agctgagaga
601 ccttgtgacc tcgggactca acacctcggt ggtgttcggc ttcctgaacc tggtgctctg
661 ggtcggcaac ctgtggttcg tgtttaagga gacaggctgg gccgccccgt tcctgcgcgc
721 gcctcccggc gcccccgaga aacaaccggc acccggggac gcctacggcg atgcaggcta
781 cgggcagggc cccggcgggt acgggcccca ggattcctac gggcctcagg gcggctacca
841 gcctgactat ggtcaaccag ccggcagcgg tggcagtggc tacgggcctc agggcgacta
901 tgggcagcaa ggctacggcc cgcagggtgc acccacctcc ttctccaatc agatgtagtc
961 tggtcagtga agcccaggag gacctggggg gggcaagagc tcaggagaag gcctgccccc
1021 cttcccaccc ctatacccta ggtctccacc cctcaagcca ggagaccctg tctttgctgt
1081 ttatatatat atatattata tataaatatc tatttatctg tctgagccct gccctcactc
1141 cactcccctc atccactagg tgcccagtct tgagtgggcc ccctctctta ccccgtccct
1201 ttccctgcat cccttggccc ctctctgttt accctccctg tcccctgagg ttaaggggat
1261 ctaaaaggag gacagggagg gaacagacct cggctgtgtg gggagggtgg gcgtgacttc
1321 agactctctc ctctctctcc ctccactcct cccaactctg gccttggttc ctccagcaat
1381 gcctgcctga acaaaggccg ttagggaaat ccaactccag ggttaaagaa aggcagagat
1441 tgggggggct tggggtagag aggacagttt aggacccaag gtggtcttgg agaggaggtg
1501 tggagtggag gggtcagcag gggggttggg ttccagacag agtggatctg gagtctgaag
1561 gagaggagtg cgctagagca ttctggggtg gggcttggaa gggcgctgag ggcagggttc
1621 tagaaggggc gaggctttaa gcgaggcaga atggtgggct ccagagtagg tgggtcttgg
1681 attggtacca gagcctatgg aaagggtgtg gcttggaaca tttgggagac tgagcttgat
1741 tctaaagggg acagatcttg agcaaggcaa gaagtgggat tcaggaatgg gccaagccag
1801 ggttccagac agggtggggc ttagaatggg gcttccatgg tggtttcaga aagggcagcc
1861 cctccccatg gtgcagtgaa gaaaatgttt tacaatggct gggtttgggc agtggagagg
1921 ggacttggat aggagcttcc agatgggttt tgttaggggt gggggagaat ggctctggct
1981 acgacttggg acggaagtgg cctgagaaga gtcgagtgat atggcttgta gggtgaggcg
2041 tgggatccag agagaagcac cccaccacac acacccttcc ccactcccgt gatgaaacag
2101 ctaggttaat aggaggacag aaccaacggg tctgtgggac tggcccaccc ctcttccccc
2161 ttcccctgcg ccctccctcc ctccacacct ccacccgtcc tggggtggtt ggaggcctgg
2221 tctggagccc ctatcctgca ccctctgcta tgtctgtgat gtcagtagtg cctgtgatcg
2281 tgtgttgcca ttttgtctgg ctgtggcccc tccttctccc ctccagaccc ctaccctttc
2341 ccaaaccctt cggtattgtt caaagaaccc ccctccccaa ggaagaacaa atatgattct
2401 cctctcccaa ataaactcct taaccaccta gaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2461 aaaaaaaaaa aaaa
//