LOCUS BC064525 2890 bp mRNA linear HUM 18-MAR-2009
DEFINITION Homo sapiens short chain dehydrogenase/reductase family 16C, member
5, mRNA (cDNA clone MGC:70582 IMAGE:5752917), complete cds.
ACCESSION BC064525
VERSION BC064525.1
KEYWORDS MGC.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2890)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2890)
CONSRTM NIH MGC Project
TITLE Direct Submission
JOURNAL Submitted (22-DEC-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Bethesda, MD 20892-2590, USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: Life Technologies, Inc.
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 139 Row: m Column: 23
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 40807362.
FEATURES Location/Qualifiers
source 1..2890
/db_xref="H-InvDB:HIT000261444"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="MGC:70582 IMAGE:5752917"
/tissue_type="Brain, Lung, Testis, adult, pooled whole"
/clone_lib="NIH_MGC_115"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..2890
/gene="SDR16C5"
/gene_synonym="RDH#2"
/gene_synonym="RDH-E2"
/gene_synonym="RDHE2"
/db_xref="GeneID:195814"
/db_xref="HGNC:HGNC:30311"
/db_xref="MIM:608989"
CDS 52..981
/gene="SDR16C5"
/gene_synonym="RDH#2"
/gene_synonym="RDH-E2"
/gene_synonym="RDHE2"
/codon_start=1
/product="short chain dehydrogenase/reductase family 16C,
member 5"
/protein_id="AAH64525.1"
/db_xref="GeneID:195814"
/db_xref="HGNC:HGNC:30311"
/db_xref="MIM:608989"
/translation="MSFNLQSSKKLFIFLGKSLFSLLEAMIFALLPKPRKNVAGEIVL
ITGAGSGLGRLLALQFARLGSVLVLWDINKEGNEETCKMAREAGATRVHAYTCDCSQK
EGVYRVADQVKKEVGDVSILINNAGIVTGKKFLDCPDELMEKSFDVNFKAHLWTYKAF
LPAMIANDHGHLVCISSSAGLSGVNGLADYCASKFAAFGFAESVFVETFVQKQKGIKT
TIVCPFFIKTGMFEGCTTGCPSLLPILEPKYAVEKIVEAILQEKMYLYMPKLLYFMMF
LKSFLPLKTGLLIADYLGILHAMDGFVDQKKKL"
BASE COUNT 896 a 561 c 608 g 825 t
ORIGIN
1 ccggcttctc cgcggacagc tagggagagt gtcctgggtg tcagccagaa catgtctttc
61 aacctgcaat catcaaagaa actgttcatt ttcttaggaa aatcactgtt tagtcttctg
121 gaggctatga tttttgcctt actcccaaag ccacggaaga acgttgctgg tgaaatagtc
181 ctcatcacag gtgctggaag tggactcgga aggctcttag ccttgcagtt tgcccggctg
241 ggatctgttc ttgttctctg ggatatcaat aaggagggga atgaggaaac atgtaagatg
301 gctcgggaag ctggagccac aagagtgcac gcctatacct gcgattgcag ccaaaaggaa
361 ggagtgtata gagtagccga ccaggttaaa aaagaagtcg gcgatgtttc catcctaatc
421 aacaatgccg gaatcgtaac aggcaaaaag ttccttgact gtccagatga gcttatggaa
481 aagtcatttg atgtgaattt caaagcacat ttatggactt ataaagcctt tctacctgct
541 atgattgcta atgaccatgg acatttggtt tgcatttcaa gttcagctgg attaagtgga
601 gtaaatgggc tggcagatta ctgtgcaagt aaatttgcag cctttgggtt tgctgaatct
661 gtatttgtag aaacatttgt ccaaaaacaa aaggggatca aaaccacgat tgtgtgcccc
721 ttttttataa aaactggaat gtttgaaggt tgtactacag gctgtccttc tctgttgcca
781 attctggaac caaaatatgc agttgaaaaa atagtagaag ctattctaca agaaaaaatg
841 tacttgtata tgccaaagtt gttatacttc atgatgtttc ttaaaagctt tttgcccctc
901 aagacaggac tgcttatagc tgactatttg ggcatccttc atgcaatgga tggctttgtt
961 gaccaaaaga agaagctcta aagaccaact ctatggctaa ggtcatctga tacacagtgt
1021 tacataatgc gtacttcaat gaagaaaagt atttttgtct gacagtggaa tatatctgga
1081 gaccacaagt accactccta ttctgttatc tggactagaa ttttcaatca atgtgtttga
1141 aaataatgtt gctatcacct atttggttga gttttggttt tttctttttc tttttttttc
1201 caaaaataaa gacagcccat ttttgtcatt tccattacca cagatgtaag aaagtgataa
1261 gccatggcca tgagctgccc tgagctttgg tcgttgggga ggtggctcaa atggagccag
1321 cggctgtggt tgacctgcct tggggagcag ggctgagggg cgaagaggac atgtggatat
1381 ccagccagaa tgccctctct ccagaggaca cacagctctg gatttctacc cccttgctat
1441 cctctctggc cattttgaac ctgtaccacc taatgtagaa aaggcccgcc tccagtgccc
1501 ttctttccaa aacagctaca caaatgcttc tgaatgccct ggatacgcag accgagtggc
1561 agtctggcta aaggcccatc cagcactatt gtgcccaaga gccttaccgg gcattccctg
1621 aagccccctc ataggcagtg atcctagacc aaactcttaa atagaatcac ttttgtttcc
1681 tagaagagat caaagagtgg ttgcttctta ctttgaagat gaaattatac caagttaggt
1741 tttttgctat ctattgatcc aaaaaatata ttcgtgcaat taaagttaag tgttcaactt
1801 agtatttcaa gttgggattc aggttgaggc attttcctgc agaatgggca attttatgca
1861 tttatattca tcagtgctgc cctcactttg gatctattgt attcttacag tttaatcaac
1921 tggcaaagtg ctttcatgct ttggagatta actataaaag caagattaag aaaaatatgt
1981 taattaccat atccctggaa ctccttctca ggctggtggg ggcagccttg caagagaaac
2041 agcagccttt gtctcttccc tcttgtgggg agcaaggagg ggatgagcgg taccttggga
2101 gacccggtaa aagtctaaag aattgagaat ttgactatct tgggggtaaa atgctgtcat
2161 aggggcagca gtctcagggg gtgtaaactc tggaatccac tatggtttac cttgagtggc
2221 ctgcacgaac atgacagccc tgatctgtat ttcctttcca ttcagaaaac cttaaaaaaa
2281 aaaaacttgt tttatgataa tattataaca atcataacta acatttactg tgcccggcag
2341 caaattaagt atttgacaaa cattatttca ttaaacgaga ctgtcaatca ttactcaaag
2401 aatgatgaag gtatttggtg tatgccaaag aataaaggcg ttttatttca cagtgacatc
2461 ttattccact gtagatgtat actgagagga tcaaaggccc tctcagagtc acccactgat
2521 gttccaaatc cttggttaac aaggttaatt aagagagaag cacaatattg ctgtaatatt
2581 acaattccag aagcgtatct tctagggtcc tgtctattta gttaaagaat aaagctcaga
2641 ctcttcgggg attcagtaca acaaaggtcc aggagcactg caggcatcct ccacatcata
2701 acagcattaa tagcaattat ttctaattgg agtgcatctt ggctggactg cgacaaaggc
2761 ctgaaattca attgtggttt taaaataccc ataaaattgt ctaaacaaat tcaaaaaaaa
2821 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
2881 aaaaaaaaaa
//