LOCUS BC064398 2577 bp mRNA linear HUM 23-DEC-2003
DEFINITION Homo sapiens proteasome (prosome, macropain) 26S subunit,
non-ATPase, 1, mRNA (cDNA clone IMAGE:5530252), partial cds.
ACCESSION BC064398
VERSION BC064398.1
KEYWORDS .
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2577)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
REFERENCE 2 (bases 1 to 2577)
AUTHORS Strausberg,R.
TITLE Direct Submission
JOURNAL Submitted (15-DEC-2003) National Institutes of Health, Mammalian
Gene Collection (MGC), Cancer Genomics Office, National Cancer
Institute, 31 Center Drive, Room 11A03, Bethesda, MD 20892-2590,
USA
REMARK NIH-MGC Project URL: http://mgc.nci.nih.gov
COMMENT Contact: MGC help desk
Email: cgapbs-r@mail.nih.gov
Tissue Procurement: ATCC
cDNA Library Preparation: Life Technologies, Inc.
cDNA Library Arrayed by: The I.M.A.G.E. Consortium (LLNL)
DNA Sequencing by: National Institutes of Health Intramural
Sequencing Center (NISC),
Gaithersburg, Maryland;
Web site: http://www.nisc.nih.gov/
Contact: nisc_mgc@nhgri.nih.gov
Akhter,N., Ayele,K., Beckstrom-Sternberg,S.M., Benjamin,B.,
Blakesley,R.W., Bouffard,G.G., Breen,K., Brinkley,C., Brooks,S.,
Dietrich,N.L., Granite,S., Guan,X., Gupta,J., Haghighi,P.,
Hansen,N., Ho,S.-L., Karlins,E., Kwong,P., Laric,P., Legaspi,R.,
Maduro,Q.L., Masiello,C., Maskeri,B., Mastrian,S.D.,McCloskey,J.C.,
McDowell,J., Pearson,R., Stantripop,S., Thomas,P.J., Touchman,J.W.,
Tsurgeon,C., Vogt,J.L., Walker,M.A., Wetherby,K.D., Wiggins,L.,
Young,A., Zhang,L.-H. and Green,E.D.
Clone distribution: MGC clone distribution information can be found
through the I.M.A.G.E. Consortium/LLNL at: http://image.llnl.gov
Series: IRAK Plate: 139 Row: a Column: 2
This clone was selected for full length sequencing because it
passed the following selection criteria: matched mRNA gi: 25777599.
FEATURES Location/Qualifiers
source 1..2577
/db_xref="H-InvDB:HIT000261361"
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/clone="IMAGE:5530252"
/tissue_type="Uterus, leiomyosarcoma"
/clone_lib="NIH_MGC_71"
/lab_host="DH10B"
/note="Vector: pCMV-SPORT6"
gene 1..>2577
/gene="PSMD1"
/gene_synonym="P112"
/gene_synonym="S1"
/db_xref="GeneID:5707"
CDS 134..>2577
/gene="PSMD1"
/gene_synonym="P112"
/gene_synonym="S1"
/codon_start=1
/product="PSMD1 protein"
/protein_id="AAH64398.1"
/db_xref="GeneID:5707"
/translation="MITSAAGIISLLDEDEPQLKEFALHKLNAVVNDFWAEISESVDK
IEVLYEDEGFRSRQFAALVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIA
KCIDHYTKQCVENADLPEGEKKPIDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRL
DVFEKTILESNDVPGMLAYSLKLCMSLMQNKQFRNKVLRVLVKIYMNLEKPDFINVCQ
CLIFLDDPQAVSDILEKLVKEDNLLMAYQICFDLYESASQQFLSSVIQNLRTVGTPIA
SVPGSTNTGTVPGSEKDSDSMETEEKTSSAFVGKTPEASPEPKDQTLKMIKILSGEMA
IELHLQFLIRNNNTDLMILKNTKDAVRNSVCHTATVIANSFMHCGTTSDQFLRDNLEW
LARATNWAKFTATASLGVIHKGHEKEALQLMATYLPKDTSPGSAYQEGGGLYALGLIH
ANHGGDIIDYLLNQLKNASNDIVRHGGSLGLGLAAMGTARQDVYDLLKTNLYQDDAVT
GEAAGLALGLVMLGSKNAQAIEDMVGYAQETQHEKILRGLAVGIALVMYGRMEEADAL
IESLCRDKDPILRRSGMYTVAMAYCGSGNNKAIRRLLHVAVSDVNDDVRRAAVESLGF
ILFRTPEQCPSVVSLLSESYNPHVRYGAAMALGICCAGTGNKEAINLLEPMTNDPVNY
VRQGALIASALIMIQQTEITCPKVNQFRQLYSKVINDKHDDVMAKFGAILAQGILDAG
GHNVTISLQSRTGHTHMPSVVGVLVFTQFWFWFPLSHFLSLAYTPTCVIGLNKDLKVS
TAVLSITAKAKKKKKK"
misc_feature 2084..2188
/gene="PSMD1"
/gene_synonym="P112"
/gene_synonym="S1"
/note="PC_rep; Region: Proteasome/cyclosome repeat"
/db_xref="CDD:pfam01851"
BASE COUNT 752 a 509 c 623 g 693 t
ORIGIN
1 gtgaggaggc gactgactga gcagcgcacc cggggagcaa ggaggcgcgg tgaactgagc
61 ggcccctgag ctgacagata cactgcgcag ctggaacggc gagcgagccg acgggcgagt
121 gaggggcgca gccatgatca cctcggccgc tggaattatt tctcttctgg atgaagatga
181 accacagctt aaggaatttg cactacacaa attgaatgca gttgttaatg acttctgggc
241 agaaatttcc gagtccgtag acaaaataga ggttttatac gaagatgaag gtttccggag
301 tcggcagttt gcagccttag tggcatctaa agtattttat cacctggggg cttttgagga
361 gtctctgaat tatgctcttg gagcagggga cctcttcaat gtcaatgata actctgaata
421 tgtggaaact attatagcaa aatgcattga tcactacacc aaacaatgtg tggaaaatgc
481 agatttgcct gaaggagaaa aaaaaccaat tgaccagaga ttggaaggca tcgtaaataa
541 aatgttccag cgatgtctag atgatcacaa gtataaacag gctattggca ttgctctgga
601 gacacgaaga ctggacgtct ttgaaaagac catactggag tcgaatgatg tcccaggaat
661 gttagcttat agccttaagc tctgcatgtc tttaatgcag aataaacagt ttcggaataa
721 agtactaaga gttctagtta aaatctacat gaacttggag aaacctgatt tcatcaatgt
781 ttgtcagtgc ttaattttct tagatgatcc tcaggctgtg agtgatatct tagagaaact
841 ggtaaaggaa gacaacctcc tgatggcata tcagatttgt tttgatttgt atgaaagtgc
901 tagccagcag tttttgtcat ctgtaatcca gaatcttcga actgttggca cccctattgc
961 ttctgtgcct ggatccacta atacgggtac tgttccggga tcagagaaag acagtgactc
1021 gatggaaaca gaagaaaaga caagcagtgc atttgtagga aagacaccag aagccagtcc
1081 agagcctaag gaccagactt tgaaaatgat taaaatttta agtggtgaaa tggctattga
1141 gttacatctg cagttcttaa tacgaaacaa taatacagac ctcatgattc taaaaaacac
1201 aaaggatgca gtacggaatt ctgtatgtca tactgcaacc gttatagcaa actcttttat
1261 gcactgtggg acaaccagtg accagtttct tagagataat ttggaatggt tagccagagc
1321 cactaactgg gcaaaattta ctgctacagc cagtttgggt gtaattcata agggtcatga
1381 aaaagaagca ttacagttaa tggcaacata ccttcccaag gatacttctc caggatcagc
1441 ctatcaggaa ggtggaggtc tctatgcact aggtcttatt catgccaatc atggtggtga
1501 tataattgac tatctgctta atcagcttaa gaacgccagc aatgatatcg ttagacacgg
1561 tggcagtctg ggccttggtt tggcagccat gggaactgca cgtcaagatg tttatgattt
1621 gctaaaaaca aacctttatc aggatgatgc agtaacaggg gaagcagctg gcctggccct
1681 aggtttggtt atgttgggct ctaaaaatgc tcaggctatt gaggacatgg ttggttatgc
1741 acaagaaact caacatgaga agattctgcg tggtcttgca gttggcatag ctttagtaat
1801 gtatgggagg atggaagagg ctgatgctct cattgaatct ctctgtcgtg acaaggaccc
1861 aattcttcga aggtctggaa tgtatactgt agccatggct tattgtggct ctggtaacaa
1921 caaagcaatt cgacgcctgc tacatgttgc tgtaagtgat gttaatgatg atgtcaggag
1981 ggcagcagta gaatcacttg ggttcattct attcagaacc cctgaacagt gcccaagtgt
2041 tgtctctttg ttgtcagaga gttacaaccc tcatgtgcgc tacggagctg caatggcctt
2101 ggggatatgc tgtgctggta caggaaacaa ggaagccatt aatttgctag aaccaatgac
2161 aaacgacccc gtgaactacg tgaggcaagg ggcactcata gcttcagctc tcatcatgat
2221 ccagcagact gaaatcactt gtccaaaggt gaatcagttc agacagctgt attccaaagt
2281 catcaatgat aagcatgatg atgtcatggc caagtttggc gctattctgg cccagggcat
2341 actggatgca ggtggtcata atgtcacaat ctccttgcag tccaggactg ggcatactca
2401 tatgccttct gtggttggcg tccttgtatt tacccagttt tggttctggt ttcctctttc
2461 acacttcctg tcattggctt atacccctac ctgtgtcatt ggccttaaca aggacttaaa
2521 ggtttctact gctgtattat ctataactgc caaggctaaa aaaaaaaaaa aaaaaaa
//